Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq73986 93.3 4e-14
seq72241 89.7 4e-13
>seq73986
Length=64159
Score = 93.3 bits (102), Expect = 4e-14
Identities = 109/146 (75%), Gaps = 1/146 (1%)
Strand=Plus/Plus
Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029
|| |||||| ||||||||| | |||||| ||||| || ||||| |||||||| || ||
Sbjct 17026 TTGATCATTGTTCCTCCTCTAAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTCTGGATA 17085
Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089
|| || || ||| ||| |||||||||||| || || ||| |||| || |||||
Sbjct 17086 TTATAGTCAGCCAAAGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGC 17145
Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115
|||||| || | |||||||| ||
Sbjct 17146 TGATCGGGAGGAATACCTTCTTTATC 17171
>seq72241
Length=55963
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041
|| ||||| | |||||| || | |||||| || || || || || || |||||||| |
Sbjct 40176 CCCCCTCGAAGCCTCAAGACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCA 40235
Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101
| ||| || ||||||| || || || || |||| || | ||| ||||| ||
Sbjct 40236 AGGGTTCTACCGTCTTCCAGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGA 40295
Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161
| ||||| || || ||| ||| || || | | ||| || ||| | ||||
Sbjct 40296 ATTCCTTCCTTATCTTGAATCTTTGCCTTAACGTTGTCAATAGTATCAGAACTTTCCACC 40355
Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| | || ||||||||||| || | ||||||||||||||||||||
Sbjct 40356 TCAAGAGTGATGGTTTTGCCTGTTAGAGTTTTGACAAAAATTTGCAT 40402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419181671855862
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |