Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq39070 111 1e-19 >seq39070 Length=11651 Score = 111 bits (122), Expect = 1e-19 Identities = 287/428 (67%), Gaps = 12/428 (3%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||||||||| | ||| || || ||||| || || || || || | || ||| Sbjct 8225 TTTTGATATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAAACTAATCAAC 8166 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACA--ATAGTATTTTTTACACCCTAATTCTAGTA 12977 ||||| ||||||| || || | ||||| ||| |||| | | || || || | Sbjct 8165 TCCATCCAATCGAACGGGTTCT--GAACATCATACATTTTTCCATATCCCAAAGCTCCCA 8108 Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037 ||||||||| |||||||| || |||||||| |||||| || | |||||| || | | Sbjct 8107 GCAATCTGTCTGCAACAAATTCAATGTACTGGCTCATTAGGTCTCCGTTCATCCCCACCA 8048 Query 13038 ATTTTACAGGC-ATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 | ||||| | || || | || | || || ||||| ||||| || ||| Sbjct 8047 GTGC-ACAGGGTAGGGCGTCACACACGAACTCCTTCTCAATATCCACTGCATCAGCAACG 7989 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAA---ACATCATACAT 13153 || | || ||| | ||| || || ||||| | || | | | | || Sbjct 7988 ATTCCCCTGATT-CTTTC-CTCGCTCAGC-TTTGACCGCAGCAGACTGTAGAGTAAGCAG 7932 Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 ||||| ||||| || | |||||||||| | |||| |||||| || || |||| || Sbjct 7931 GCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTTAATCCG 7872 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273 ||||||||||| ||||| || | ||||||||| ||| ||| ||||| ||||||||| Sbjct 7871 GGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATT 7812 Query 13274 CCTTCAAC 13281 || ||||| Sbjct 7811 CCCTCAAC 7804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430565858473404