Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq53817 100 2e-16 seq72241 96.9 3e-15 seq42370 93.3 4e-14 seq71687 89.7 4e-13 >seq53817 Length=15024 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||| || |||||||| ||||| | || |||| || |||||| Sbjct 3654 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTTCTGCCGTCTTCGAGCTGC 3713 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 |||||| || | || | ||||||||| ||| || | | ||||||||| |||||| Sbjct 3714 TTACCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATTTTG 3773 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | |||||||| | || || ||| | || ||||| || || ||| Sbjct 3774 GCCTTGACATTGTCAATGGTATCCGAGGATTCGACCTCAAGGGTGATGGTCTTCCCCGTG 3833 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || |||||||| Sbjct 3834 AGGGTTTTCACGAAGATCTGCAT 3856 >seq72241 Length=55963 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| || || | ||| || || |||||| ||||| |||||||| || Sbjct 40175 ACCCCCTCGAAGCCTCAAGACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGC 40234 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || |||| ||||||||||| ||| || |||||| ||||||||||| || Sbjct 40235 AAGGGTTCTACCGTCTTCCAGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGG 40294 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677 | | |||||| || ||| || ||| | | | | | || ||||| | | ||| Sbjct 40295 AATTCCTTCCTTATCTTGAATCTT-TGCCTTAACGTTGTCAATAGTATCAGAACTTTCCA 40353 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || |||||||| || || |||||||| |||||||| |||||| Sbjct 40354 CCTCAAGAGTGATGGTTTTGCCTGTTAGAGTTTTGACAAAAATTTGCATC 40403 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| | |||||| ||| ||||||||||||||| |||||||| | || |||| Sbjct 39963 AACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGCTAGAGTACGACCGTCT 40022 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 |||| |||||| ||| | | || | | || |||||| || | | ||| || ||| Sbjct 40023 TCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGGAATCCCTTCTTTATCC 40082 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||||| | | |||||||| | | || ||| | || || ||| Sbjct 40083 TGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCAACCTCAAGAGTAATAGTT 40142 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || |||||||||||||| Sbjct 40143 TTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174 >seq42370 Length=41228 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| ||| ||||||||||||||| |||||||| | || | || || Sbjct 10643 CACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGCTAGAGTTCTGCCATCTTC 10584 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| ||| | | || || | |||||| ||| || | | |||||| ||| Sbjct 10583 CAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGAATCCCTTCCTTATCCTG 10524 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | | | || ||||| | | || ||| | || |||||||| Sbjct 10523 AATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTCAACCTCAAGAGTAATGGTTTT 10464 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| ||||| || || ||||||||||||||| Sbjct 10463 ACCAGTGAGGGTCTTAACAAAAATCTGCATC 10433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||| | ||| || || | ||| || || |||||| || ||||||||||||||| Sbjct 10432 CCACCGCGAAGCCTCAAGACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 10373 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||||| |||||| ||| | | || | |||||||||||| || Sbjct 10372 AAGGTTCTACCATCCTCCAACTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGA 10313 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||| || ||| ||| ||| | | || ||||| | | ||| | Sbjct 10312 ATCCCCTCCTTATCTTGAATCTTCGCCTTAACGTTATCAATTGTATCAGAACTCTCGACC 10253 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || | || || || ||||| || |||||||| ||||| || |||||| Sbjct 10252 TCCAAGGTAATCGTCTTACCAGTCAGAGTTTTAACAAAGATTTGCATC 10205 >seq71687 Length=64904 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || |||||||| | | || | || ||||| |||||| || ||||||||||| || Sbjct 44686 CCACCGCGCAAGCGAAGGACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAATCCGCT 44745 Query 48560 AATTGTC--GCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || | ||||| |||||||| ||| | | || | | |||||||||| | Sbjct 44746 AA-GGTCCTGC-CTTCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCCGGTG 44803 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||| || || ||| ||| | | | |||||||||| || || Sbjct 44804 GGATGCCTTCCTTATCTTGGATCTTCGCCTTCACATTGTCAATGGTATCGGAGGATTCAA 44863 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||| ||||| || || |||||||| || ||||||||| Sbjct 44864 CCTCGAGGGTAATGGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCATC 44913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420844063611302