Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq72788 120 2e-22 seq66783 116 2e-21 seq45416 114 7e-21 seq24211 114 7e-21 seq27648 113 2e-20 seq79035 111 8e-20 seq73817 109 3e-19 seq61987 109 3e-19 seq58995 109 3e-19 seq66043 107 1e-18 seq58315 107 1e-18 seq25953 107 1e-18 seq78829 105 3e-18 seq68970 105 3e-18 seq36036 104 1e-17 >seq72788 Length=84319 Score = 120 bits (132), Expect = 2e-22 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAAT-CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||||| |||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 27233 AATAAAAAATTCAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 27292 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 27293 CGACGCTCTAACCAACTGAGCTAATAGGCC 27322 >seq66783 Length=78900 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 73767 AAAAAATCTAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 73708 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 73707 GCTCTAACCAACTGAGCTAATAGGCC 73682 >seq45416 Length=14861 Score = 114 bits (126), Expect = 7e-21 Identities = 78/87 (90%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | || ||||||||| | || |||||||| ||||||||||||||||||||||| Sbjct 3614 AAAAAATTATAAATGGCCCATGCAGGGCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 3673 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 3674 CGCTCTAACCAACTGAGCTAATAGGCC 3700 >seq24211 Length=12766 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| || | ||| |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 4090 AATAAATAAACTAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 4032 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 4031 GACGCTCTAACCAACTGAGCTAATGGGCC 4003 >seq27648 Length=15636 Score = 113 bits (124), Expect = 2e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 4092 AAAATAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 4033 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 4032 TCTAACCAACTGAGCTAATAGGCC 4009 >seq79035 Length=86836 Score = 111 bits (122), Expect = 8e-20 Identities = 74/82 (90%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 11449 ATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 |||||| |||||||||| | | |||||||| |||||||||||||||||||||||||||| Sbjct 60985 ATCAAACTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTC 61044 Query 11508 TRACCAACTGAGCTAATGGGCC 11529 | ||||||||||||||| |||| Sbjct 61045 TAACCAACTGAGCTAATAGGCC 61066 >seq73817 Length=58787 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 54385 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 54326 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 54325 TGAGCTAATGGGCC 54312 >seq61987 Length=9708 Score = 109 bits (120), Expect = 3e-19 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 11449 ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCT 11508 ||||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| Sbjct 8541 ATCAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCT 8598 Query 11509 RACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| Sbjct 8599 AACCAACTGAGCTAATGGGCC 8619 >seq58995 Length=5858 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2745 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2686 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 2685 TGAGCTAATGGGCC 2672 >seq66043 Length=17072 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 13037 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 12978 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 12977 CAACTGAGCTAATAGGCC 12960 >seq58315 Length=28754 Score = 107 bits (118), Expect = 1e-18 Identities = 82/97 (85%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||| |||| ||||||| | |||||| ||| | | |||||||| ||||||||||||| Sbjct 23897 ATATAATTGTGAAAAAAT--ATTTGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTT 23954 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| ||||||||||||||| |||| Sbjct 23955 ATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 23991 Score = 87.8 bits (96), Expect = 9e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 |||| | ||| |||||| | | || ||||| | |||||||||||||||||| |||||| Sbjct 11713 AAATATATTTGACCCATGTAGGTCTCAAACCTACAACCTTCGCGTTATTAGCATGACGCT 11772 Query 11507 CTRACCAACTGAGCTAATGGGC 11528 || ||||||||||||||| ||| Sbjct 11773 CTAACCAACTGAGCTAATAGGC 11794 >seq25953 Length=58187 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 20630 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 20571 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 20570 CAACTGAGCTAATAGGCC 20553 >seq78829 Length=42964 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 34996 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 35055 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 35056 CTGAGCTAATAGGCC 35070 >seq68970 Length=23290 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 9277 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 9336 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 9337 CTGAGCTAATAGGCC 9351 >seq36036 Length=36926 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 25145 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 25086 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 25085 TGAGCTAATAGGCC 25072 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261238470552952