Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq68281 167 4e-37 seq38692 140 5e-29 >seq68281 Length=37623 Score = 167 bits (184), Expect = 4e-37 Identities = 185/247 (75%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| ||||||| || || || || || ||||| ||||||||| | || || | | || Sbjct 12080 TCTTAGAGATAATATTCAGGGTATTACTAAGCCTGCTATCCGTAGGCTTGCCAGAAGAGG 12021 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||| ||| | | ||||| ||| |||||||||||| ||||| ||| |||||||| || Sbjct 12020 TGGAGTTAAGAGAATTTCTGGTTTGATCTATGAAGAGACTCGTGGTGTGTTGAAGATTTT 11961 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | | | || |||| |||||| | |||||| ||||||||| |||||||| || Sbjct 11960 CTTGGAAAATGTCATCCGCGATGCTGTTACCTATACTGAGCACGCTCGTCGTAAGACAGT 11901 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| | || |||||||||||| | || ||| | | ||||||| ||||| Sbjct 11900 GACTGCCATGGATGTGGTTTATGCATTGAAAAGACAGGGCAGGACTCTTTATGGATTTGG 11841 Query 16693 AAGTTAA 16699 ||||| Sbjct 11840 CGGTTAA 11834 Score = 131 bits (144), Expect = 3e-26 Identities = 177/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||| || || || ||||| ||||| |||||||| | || || | | || ||||| Sbjct 16479 GATAATATTCAGGGTATCACTAAGCCTGCTATCCGAAGGCTTGCCAGAAGAGGCGGAGTT 16420 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | | ||||| ||| | |||||||||| ||||| || |||||||| ||| | | Sbjct 16419 AAGAGAATTTCTGGGTTGATTTATGAAGAGACTCGTGGGGTGTTGAAGATTTTCTTGGAA 16360 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||||||| | |||||||||||| ||| || ||||| || || || Sbjct 16359 AATGTCATCCGTGATGCTGTTACCTATACCGAGCATGCTCGCCGCAAGACCGTGACTGCC 16300 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || |||||||| | || || | | ||||||| ||||| |||| Sbjct 16299 ATGGATGTTGTTTACGCATTGAAGAGACAGGGAAGGACTCTTTATGGATTTGGGGGTTAG 16240 Query 16700 TCTTCTA 16706 ||||| Sbjct 16239 GTTTCTA 16233 >seq38692 Length=21655 Score = 140 bits (154), Expect = 5e-29 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| |||||||||||||| ||||| || ||||| || ||||| |||||||| | || Sbjct 2866 TCTTCGCGATAACATCCAAGGTATCACAAAACCAGCAATTCGTCGATTGGCTCGTAGAGG 2925 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || |||||| || || ||| ||||||| || | ||||| || |||||||| || Sbjct 2926 AGGTGTGAAGCGTATCAGCGGTTTGATCTATGAGGAAACTCGTGGAGTGTTGAAGATTTT 2985 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || | | ||||| | |||||| || || || |||||||||| | ||||| || Sbjct 2986 TCTAGAAAATGTTATTCGTGATGCAGTCACATACACAGAGCACGCTAGGAGGAAGACGGT 3045 Query 16633 CACCTCCATGGATATCGTCTATGCA 16657 ||| |||||||| | || |||||| Sbjct 3046 GACCGCCATGGATGTGGTTTATGCA 3070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79002693626286