Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq68281 167 4e-37
seq38692 140 5e-29
>seq68281
Length=37623
Score = 167 bits (184), Expect = 4e-37
Identities = 185/247 (75%), Gaps = 0/247 (0%)
Strand=Plus/Minus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||| ||||||| || || || || || ||||| ||||||||| | || || | | ||
Sbjct 12080 TCTTAGAGATAATATTCAGGGTATTACTAAGCCTGCTATCCGTAGGCTTGCCAGAAGAGG 12021
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|||||| ||| | | ||||| ||| |||||||||||| ||||| ||| |||||||| ||
Sbjct 12020 TGGAGTTAAGAGAATTTCTGGTTTGATCTATGAAGAGACTCGTGGTGTGTTGAAGATTTT 11961
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
| | | | || |||| |||||| | |||||| ||||||||| |||||||| ||
Sbjct 11960 CTTGGAAAATGTCATCCGCGATGCTGTTACCTATACTGAGCACGCTCGTCGTAAGACAGT 11901
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| |||||||| | || |||||||||||| | || ||| | | ||||||| |||||
Sbjct 11900 GACTGCCATGGATGTGGTTTATGCATTGAAAAGACAGGGCAGGACTCTTTATGGATTTGG 11841
Query 16693 AAGTTAA 16699
|||||
Sbjct 11840 CGGTTAA 11834
Score = 131 bits (144), Expect = 3e-26
Identities = 177/247 (72%), Gaps = 0/247 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
||||| || || || ||||| ||||| |||||||| | || || | | || |||||
Sbjct 16479 GATAATATTCAGGGTATCACTAAGCCTGCTATCCGAAGGCTTGCCAGAAGAGGCGGAGTT 16420
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||| | | ||||| ||| | |||||||||| ||||| || |||||||| ||| | |
Sbjct 16419 AAGAGAATTTCTGGGTTGATTTATGAAGAGACTCGTGGGGTGTTGAAGATTTTCTTGGAA 16360
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || |||| ||||||| | |||||||||||| ||| || ||||| || || ||
Sbjct 16359 AATGTCATCCGTGATGCTGTTACCTATACCGAGCATGCTCGCCGCAAGACCGTGACTGCC 16300
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | || || |||||||| | || || | | ||||||| ||||| ||||
Sbjct 16299 ATGGATGTTGTTTACGCATTGAAGAGACAGGGAAGGACTCTTTATGGATTTGGGGGTTAG 16240
Query 16700 TCTTCTA 16706
|||||
Sbjct 16239 GTTTCTA 16233
>seq38692
Length=21655
Score = 140 bits (154), Expect = 5e-29
Identities = 154/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||||| |||||||||||||| ||||| || ||||| || ||||| |||||||| | ||
Sbjct 2866 TCTTCGCGATAACATCCAAGGTATCACAAAACCAGCAATTCGTCGATTGGCTCGTAGAGG 2925
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|| || |||||| || || ||| ||||||| || | ||||| || |||||||| ||
Sbjct 2926 AGGTGTGAAGCGTATCAGCGGTTTGATCTATGAGGAAACTCGTGGAGTGTTGAAGATTTT 2985
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
|| | | ||||| | |||||| || || || |||||||||| | ||||| ||
Sbjct 2986 TCTAGAAAATGTTATTCGTGATGCAGTCACATACACAGAGCACGCTAGGAGGAAGACGGT 3045
Query 16633 CACCTCCATGGATATCGTCTATGCA 16657
||| |||||||| | || ||||||
Sbjct 3046 GACCGCCATGGATGTGGTTTATGCA 3070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79002693626286
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |