Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq72083 187 4e-42 seq56894 187 4e-42 seq65532 183 5e-41 seq73955 141 1e-28 seq69198 136 6e-27 seq67218 136 6e-27 seq66950 120 5e-22 seq74151 107 3e-18 seq71024 105 1e-17 seq67167 91.5 2e-13 seq49697 84.2 4e-11 seq26828 84.2 4e-11 >seq72083 Length=18787 Score = 187 bits (206), Expect = 4e-42 Identities = 237/326 (73%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286 ||||||| ||| | ||||| ||||| || ||||| ||||| | || ||||| || || Sbjct 7377 GGTTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTACCCGCTCATGGTTATTTT 7436 Query 212287 GGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTC 212346 || |||| ||| |||| ||||| ||||| || | ||||||||| || | Sbjct 7437 GGACGACTGATCGTCCAATATGCTAATTTCAAAAATTCCCATTCGTTACACTTCATCTTA 7496 Query 212347 GCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 212406 || | | |||||| | || | ||||| || || | |||||| |||| ||||| ||| Sbjct 7497 GCTGCTTAGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 7556 Query 212407 AACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCT 212466 |||||||| || ||||| ||||||||||| || |||||| |||| || || | Sbjct 7557 AACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTTGTGTAATTAAT 7616 Query 212467 ACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526 ||||||| |||| | ||||| | || ||||||||||||||| ||||||| ||| | ||| Sbjct 7617 ACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAATTTATGCATGAACGTAAT 7676 Query 212527 GCACACAACTTCCCACTTGACTTAGC 212552 || || || ||||| || ||| |||| Sbjct 7677 GCTCATAATTTCCCTCTAGACCTAGC 7702 Score = 102 bits (112), Expect = 1e-16 Identities = 200/289 (69%), Gaps = 5/289 (2%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 ||||| ||||| |||| | || |||| ||| | | || |||| |||||||||||| | Sbjct 6628 TTCTGTAACTGGATAACTAGCATCAAA-AACCGTCTTTACATTGGATGGTTTGGTGTTTT 6686 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| ||| | | | ||||| | ||||| || ||||| || || | Sbjct 6687 GATGATCCCGAC-CTTATTGACCGCAACTTCCATATTTATTACTGCCTTCATTGCTGCTC 6745 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || |||| ||| | | | || || | || || |||| Sbjct 6746 CTCCAGTAGATATTGATGGTATTCGTGTACCCATTTCATGATCTTTACTTTACGGAAACA 6805 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || || || | ||| || ||| |||| || || ||||| ||||| || || | Sbjct 6806 ATATTATTTCAG-TGCCATTATTCTTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAA 6864 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTA 211856 ||||||||| ||| | ||||||| ||| | || || ||||||||||| Sbjct 6865 TCTGGGAAGTGGCATCCGTTGATGAATGGTTATATAACGGTGGTCCTTA 6913 >seq56894 Length=101133 Score = 187 bits (206), Expect = 4e-42 Identities = 247/342 (72%), Gaps = 2/342 (1%) Strand=Plus/Plus Query 211933 GGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTA 211992 |||||||| |||||||| |||||| |||||||| | ||| |||| ||| |||| | Sbjct 63398 GGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCATGTTGCAGCTGCTACCGCTATT 63457 Query 211993 TTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCA 212052 ||| | | |||||| || |||| || || || || ||||||||| |||| || || Sbjct 63458 TTCTTGATCTACCCAATCAGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCT 63517 Query 212053 GGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTC 212112 || || |||||||||||| | |||||||| || || || ||||||||||||||| |||| Sbjct 63518 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACTCATTT 63577 Query 212113 CATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCT 212172 || ||| ||| || || || |||||| || |||||| ||||||||| ||||| Sbjct 63578 CACATGTTAGGCGTAGCTGG--GGTTCGGCGGCTTCTTATTCAGTGCTATGCATGGTTCC 63635 Query 212173 CTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTAC 212232 | || || ||| | || | |||||||| | || || || | |||||| Sbjct 63636 TTGGTAACTTCTAGTTTGATGAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 63695 Query 212233 AAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCA 212274 | ||||| ||||| ||||| || ||||| ||||| || ||| Sbjct 63696 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCA 63737 >seq65532 Length=34246 Score = 183 bits (202), Expect = 5e-41 Identities = 218/296 (74%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 212257 TATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTC 212316 ||||| ||||| | || ||||| || || || | | |||||||| ||||| ||| Sbjct 2941 TATAATATCGTAGGCGCTCATGGTTATTTTGGCCCATTGATCTTCCAATATGCTAGTTTC 3000 Query 212317 AACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTA 212376 ||||| | | |||||||||||||| || | |||||||| | || | | ||| Sbjct 3001 AACAATTCCCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTAGTTC 3060 Query 212377 ACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCA 212436 || || | |||||| |||| ||||| ||||||||||| || ||||| ||||||||||| Sbjct 3061 ACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCT 3120 Query 212437 GTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAAC 212496 || |||||| |||| || || |||||||| |||| | ||||| | || ||| Sbjct 3121 GTAGTTGATAGTAAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAAC 3180 Query 212497 CTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 |||||||||||||||||||| ||| | ||||| || || ||||| || ||| |||| Sbjct 3181 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 3236 >seq73955 Length=113899 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 212296 ATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGG 212355 |||||||| ||||| |||||||| || |||||||||||||| || | ||| Sbjct 50326 ATCTTCCAATATGCTAGTTTCAACAATTCCAATTCGTTACACTTCTTCCTAGCTGCTTGG 50267 Query 212356 CCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAAT 212415 ||||| | || ||||| || || | |||||| |||| ||||| ||||||||||| Sbjct 50266 CCTGTAGTAGGTAACTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAAC 50207 Query 212416 GGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGT 212475 || ||||| ||||||||||| || |||||| || | || || ||||| || | Sbjct 50206 GGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGATCGTGTAATTAATACTTAGGCT 50147 Query 212476 GATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526 ||| | ||||| | || ||||||||||||||||||||||| ||| | ||| Sbjct 50146 GATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 50096 >seq69198 Length=26917 Score = 136 bits (150), Expect = 6e-27 Identities = 224/322 (70%), Gaps = 1/322 (0%) Strand=Plus/Minus Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047 |||| ||| | | |||||| ||||| | || || || | ||||||||| |||| | Sbjct 7119 CTGTTTTCTTGATCTACCCAATCGGTTAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAA 7060 Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107 | || || || || || |||||| | |||||||| || || || ||||||||||| ||| Sbjct 7059 TCTCTGGTACTTTTAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATACACT 7000 Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167 ||||||| ||| || || || || | ||||| || | |||||| | ||||||| | Sbjct 6999 CATTCCA-ATGTTGGGCGTAGCTGGGGTATTCGGCGGCTCCTTATTCAGTTCTATGCATG 6941 Query 212168 GTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATG 212227 |||| | || || ||| | ||| |||||||| | || || || | Sbjct 6940 GTTCCTTGGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATCTGCTAATGAAA 6881 Query 212228 GTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCG 212287 |||||| || || ||||| ||| || ||||| ||||||||||||||||| || || Sbjct 6880 GTTACAGATTTGGTCAAGAGACAGAAACTTATAATATCGTTGCTGCACATGGTTATTTTA 6821 Query 212288 GTAGACTTATCTTCCAGTATGC 212309 | || | |||||||| |||| Sbjct 6820 GCCGATTGATCTTCCAACATGC 6799 >seq67218 Length=49544 Score = 136 bits (150), Expect = 6e-27 Identities = 254/368 (69%), Gaps = 14/368 (4%) Strand=Plus/Plus Query 194583 GAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTAC 194642 ||| ||||| || || | || || || || ||||| || || || || |||| ||| Sbjct 35454 GAAGCCTGACTACGTCATCCTCGCCGCCGCCAAGGTTGGGGGAATTCATGCTAACAATAC 35513 Query 194643 CTATCCTGCCGATTTCATCTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGC 194702 ||||| || ||||| ||| |||||| || ||||| |||||||| | | | Sbjct 35514 TTATCCAGCTGATTTTATCACCATCAATCTCCAAATCCAGACCAATGTTATCACTTCCTC 35573 Query 194703 ATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGTT 194762 ||| |||| || ||||||||| | ||||| |||||||||||||| ||||| || || Sbjct 35574 GTATTCCCATGGTGTGAAGAAACTACTATTTCTTGGTTCATCTTGCATTTATCCCAAATT 35633 Query 194763 T---CCAAAG---ATACCTATTACAGAGGATCAGTTACTTGCTAGTCCTTTGGAAGAATC 194816 | || || |||||| | || | ||| | | ||||| |||| | Sbjct 35634 TGCGCCTCAGCCCATACCTG--AAAGCGC----GTTGTTGACGGGTCCTCTGGAGCCTAC 35687 Query 194817 TAAT-AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTC 194875 |||| | || | | |||||||| |||||||| || || | ||||| ||||| ||||| Sbjct 35688 TAATGAATGGT-ACGCAATTGCTAAGATAGCTGGGATCAAAATGTGCCAAGCTTATCGCT 35746 Query 194876 AGCAGTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATA 194935 ||||| | ||| |||| || || |||||| |||||| |||| |||||| |||||| Sbjct 35747 TGCAGTTTAATTTTGATGCTATTTCTGGAATGCCCACTAATTTATATGGACCTCATGATA 35806 Query 194936 ATTTTGAT 194943 ||||| || Sbjct 35807 ATTTTCAT 35814 >seq66950 Length=22296 Score = 120 bits (132), Expect = 5e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286 ||||||| ||| | ||||| ||||| || ||||| ||||| || || ||||| || || Sbjct 3528 GGTTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 3587 Query 212287 GGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTC 212346 || || | |||||||| ||||| ||||| || | | |||||||||||||| Sbjct 3588 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAAATCCCGTTCATTACACTTCTTCCTA 3647 Query 212347 GCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 212406 || | |||||||| | || | ||||| || || | | ||| |||| ||||| ||| Sbjct 3648 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGATAT-AGCACTATGGCTTTC 3706 Query 212407 AACCTAAATGGATTCAACTTCAACCAAT 212434 |||||||| || ||||| |||||| ||| Sbjct 3707 AACCTAAACGGTTTCAATTTCAACAAAT 3734 >seq74151 Length=15306 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 211968 ACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTC 212027 |||||| |||| ||| |||||| || | | |||| | ||||| | || || || Sbjct 3339 ACCTGTTGCAGCTGCTACCGCTGTTTTATTGATCTACCAAATCGGTTAAGGAAGTTTTTC 3280 Query 212028 AGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGA 212087 || | |||||| |||| || || || || |||||||||||| | |||||||| || || Sbjct 3279 TGATAGCATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCACGCTGA 3220 Query 212088 ACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGC 212147 | ||||||||| |||||||||| || || ||| || | || | ||||| | | Sbjct 3219 GTACAACATCCTTTTGCACCCATTTCACATATTAGGCGTAGATGGGGTATTCGGCGACTC 3160 Query 212148 ATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCAC 212204 |||||| ||||||||| |||| | || || ||| | ||| | |||||||| Sbjct 3159 CTTATTCAGTGCTATGCATAGTTCCTTGGTAACTTCTAGTATGATCAGGGAAACCAC 3103 >seq71024 Length=48960 Score = 105 bits (116), Expect = 1e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 212032 GGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACAT 212091 ||||||||| |||| | || || || |||||||||||| | ||||| || | || ||| Sbjct 13701 GGTATGCCTCTAGGAACCTCTGGTACTTTCAACTTCATGATTGTATTTCAGGTTGAGCAT 13760 Query 212092 AACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTA 212151 |||||||||||||| |||| || ||| |||||| || || | ||||| | | || Sbjct 13761 GACATCCTTATGCACTCATTTCACATGTTAGGTGTAGCTGGGGTATTCGGCAGCTCCATA 13820 Query 212152 TTCTCTGCTATGCACGGTTCTCTTGTTACATCT 212184 ||| ||||||||| |||||| | || || ||| Sbjct 13821 TTCAGTGCTATGCATGGTTCTTTGGTAACTTCT 13853 >seq67167 Length=42922 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 212419 TTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGAT 212478 ||||| ||||| ||||| || |||||| |||| || || |||||||| |||| Sbjct 34617 TTCAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGAT 34558 Query 212479 GTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTC 212538 | |||| | || ||||||||||||||||||||||| ||| | ||||| || || ||| Sbjct 34557 ATCATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTC 34498 Query 212539 CCACTTGACTTAG 212551 || || ||| ||| Sbjct 34497 CCTCTAGACCTAG 34485 >seq49697 Length=8740 Score = 84.2 bits (92), Expect = 4e-11 Identities = 193/283 (68%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 211577 ACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTTATGATC 211635 ||||| |||| | || |||| ||| | | || |||| |||||||||||| | |||||| Sbjct 629 ACTGGATAACTAGCACCAAA-AACTGTCTTTACATTGGATGGTTTGGTGTT-TGATGATC 572 Query 211636 CCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACCTCCCGT 211694 ||| ||| | | | ||||| | ||||| | | || || || || | || || Sbjct 571 CCAAC-CTTATTGACCGCAACTTCCGTATTTATTATCACCTTTATTGCTGCTCATCTAGT 513 Query 211695 TGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAACATCAT 211754 ||||| || || || ||||||| | ||| || || | || | ||||| || || Sbjct 512 AGATATTGATGGTATTTGTGAACCCATTTTTGGATCTTTACTTTACTGAAACAATATTAT 453 Query 211755 CTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGGGA 211814 || ||||| || ||| |||| || || |||| ||||| || |||| ||| Sbjct 452 TTCAGGTGCCATTATTCATACTTCTGCAGCTATAAGTTTTCACTT-TACTTAATCTAGGA 394 Query 211815 AGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTAC 211857 | ||||| | ||||||| ||| | || ||||||||||||||| Sbjct 393 AACAGCATCCTTTGATGAATGGTTATATAATGGTGGTCCTTAC 351 >seq26828 Length=17835 Score = 84.2 bits (92), Expect = 4e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 212074 GTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGT 212133 |||||||| || || || |||||||||||||||||||| || ||| ||| || || || Sbjct 17831 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGG 17772 Query 212134 ATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATC 212193 | ||| | || | |||||| ||||||||| ||||| | || || ||| | ||| Sbjct 17771 GTATTCAGCGGCTCCTTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATC 17712 Query 212194 CGTGAAACCAC 212204 | |||||||| Sbjct 17711 AGGGAAACCAC 17701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806754690719120