Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq35021 199 5e-46 seq39070 163 4e-35 >seq35021 Length=73443 Score = 199 bits (220), Expect = 5e-46 Identities = 599/916 (65%), Gaps = 28/916 (3%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 ||||| ||||| ||||| | || ||||| ||||| || || || | ||| || | Sbjct 65760 TTTTGATATTCTCCCACTCTCTTCTCGAAGAAATTCGTCTTCCCCTGCAAACTAATCAAT 65819 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| |||| || ||||| ||||||||| || ||| | ||||||| | || | Sbjct 65820 TCCATCCAATCGAATGGATTCAGAACATTATACATCTTTCGATATCCCAAAGCTTCAAGC 65879 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 ||||| || || |||||||| || || |||| | || | ||||| || | || Sbjct 65880 AATCTGTCTGCAACGAATTCAATGTACTGGCTCATTAGATCTCCGTTCATACCAACTAGG 65939 Query 33193 TTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250 | || ||||| ||||| | |||||| || || || ||||| | || | Sbjct 65940 GCACAAGGCAGAGCATCGCAG--ACGAATTCTCTCTCGATATCAACTGCATCCGCTACGA 65997 Query 33251 TAGATCTAACGGTTTCTTCACTCGG-----TGGAT--GCAATAAA-TGTTTAAACATCAA 33302 | || | ||||| ||||| | || ||| | | ||| | | || Sbjct 65998 TTCCCCTGA----TTCTTTCCTCGGAAAGTTTCATCCGCAGAAGACTGT----AGAGTAA 66049 Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 || |||||||||||||| ||||| ||||||| |||| ||||| || || || || Sbjct 66050 GCAAGCGAAATCGCAGTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAG 66109 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA-GAAAAGA 33421 ||||||||| |||||||| || || | ||||||||| | || || ||| || || | Sbjct 66110 TCCGGGCATAAGGCCACGTTTCTTTAACCAAAATATCGC-GCAAAAACTCCCCGAGAAAA 66168 Query 33422 AGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT 33478 | |||||||| || ||| ||||| | | | || || | | | || ||| Sbjct 66169 ATATTCCTTCGACACAAGCGAAGGCGACTATACGTTCGGCAAAGGATTCCGAGCCGTCG- 66227 Query 33479 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 ||||| | ||||| | ||||||||||| || ||||| || ||||| || || Sbjct 66228 --ATCCAACGAAGTGCCCATTTGGCCTTCTTTTCAACGCAAGGAATTGTTTCGATTGCGC 66285 Query 33539 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33598 |||||| ||| || ||||| || || | |||| |||| ||| |||||||||| Sbjct 66286 GAAAGAGTCTGTTCTTCTCATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATACA 66345 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658 | || || ||||| || || ||||| || || || ||||| || | || |||| || Sbjct 66346 TCTCGGAGTGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAAA 66405 Query 33659 TCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 |||| |||||| | ||||| | || | ||| || || || || ||| || | Sbjct 66406 TCTGAACTTCTTTCATGAATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAGCGG 66465 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33778 | || || || | || || | || || | ||||| || || || | ||| | Sbjct 66466 CGAAGAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCCATT 66525 Query 33779 CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 33838 | || || | ||||| ||| || || || | ||||| || || ||||||||||| | Sbjct 66526 GACGGAGGTCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCTTCT 66585 Query 33839 TATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTG 33898 | ||||| | ||| || | | ||||| |||||||| || || | | |||||| | Sbjct 66586 TGTACATCTCCCAAATCTGAGGGTATTGAATTGGGAACATGCAGAAACGGTCTGGATTGG 66645 Query 33899 GTGCAAGGATGGGTTC 33914 ||||||| | ||| || Sbjct 66646 GTGCAAGCAAGGGCTC 66661 >seq39070 Length=11651 Score = 163 bits (180), Expect = 4e-35 Identities = 399/605 (66%), Gaps = 0/605 (0%) Strand=Plus/Minus Query 33301 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 33360 || || || || || || || || || || |||| | ||||| ||||| || || || Sbjct 7937 AAGCAGGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTT 7878 Query 33361 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAG 33420 | ||||||||| || || || || || ||||||||||| | | || || || || Sbjct 7877 AATCCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAA 7818 Query 33421 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT 33480 || ||||| || || ||||||||| | | | ||| || | | | ||| Sbjct 7817 AATATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATCG 7758 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| | ||||||| ||||||||||| |||||||| || || || || ||| | Sbjct 7757 ATCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACGA 7698 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 ||||| | || || | ||| || | || | |||| ||| ||||||||||| Sbjct 7697 AAGAGCCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCAATAGACTATACATC 7638 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || ||||| || || || || || ||||| ||||| || | ||||| | ||| Sbjct 7637 TCGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGAAATT 7578 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || |||||| | ||||| | || | ||| || || || || ||| || ||| Sbjct 7577 TGAACTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAGCGGCA 7518 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 33780 ||||| || | || || | || || | ||||| || ||||| | ||| | Sbjct 7517 AAAAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTTCCCATTGG 7458 Query 33781 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 33840 || || | ||| | ||| ||||| || ||||||| || || ||||| ||||| || Sbjct 7457 CGGAGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGGCCTTCTTG 7398 Query 33841 TACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 33900 ||||| | ||| || | | ||||| |||||||| ||| |||| | |||||| || Sbjct 7397 TACATTTCCCAAATCTGAGGGTATTGAATTGGGAACATACAGAATCGGTCTGGATTGGGG 7338 Query 33901 GCAAG 33905 || || Sbjct 7337 GCGAG 7333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622329688014320