Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq72241 100 3e-16
seq73986 86.0 6e-12
seq73807 86.0 6e-12
>seq72241
Length=55963
Score = 100 bits (110), Expect = 3e-16
Identities = 164/235 (70%), Gaps = 1/235 (0%)
Strand=Plus/Minus
Query 26753 TTTTTAGTCAAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCA 26811
|| |||| ||| ||| ||||| | || || ||||| |||| || || | || |||
Sbjct 40875 TTGTTAGGTAAAGAAAGATGCAGATCTTCGTGAAAACCCTAACCGGTAAGACAATTACCC 40816
Query 26812 TCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAG 26871
| || | || ||| || ||||| | ||||| |||||| ||||| || |
Sbjct 40815 TTGAGGTCGAGAGCTCCGATACAATCGACAATGTCAAGGCTAAGATTCAAGACAAGGAGG 40756
Query 26872 GGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA 26931
| || ||||||||||| || | || || | || ||||||||||||||| || | |||
Sbjct 40755 GAATCCCTCCCGATCAGCAGCGCCTAATCTTCGCCGGCAAACAACTCGAGGACGGCCGAA 40696
Query 26932 ACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986
| || ||| ||||| || || || || |||||| ||||||| ||||| |||||
Sbjct 40695 CCCTCGCCGATTATAATATCCAGAAGGAGTCTACTCTCCATCTTGTCCTCAGACT 40641
Score = 93.3 bits (102), Expect = 4e-14
Identities = 123/168 (73%), Gaps = 2/168 (1%)
Strand=Plus/Minus
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| |||||||| | ||||| ||||||| || ||||||||||| ||||| ||||||
Sbjct 40114 GATACCATCGATAATGTCAAGGCAAAGATTCAGGATAAAGAAGGGATTCCTCCGGATCAA 40055
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947
|||||||| || | | ||| || || | ||||| | | | || ||| || |||||
Sbjct 40054 CAAAGACTGATCTTTGCCGGGAAGCAGTTGGAAGACGGTCG-TACTCTAGCTGATTATAA 39996
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||||||||| || || ||| | |||||||| || | || || || ||
Sbjct 39995 CATTCAAAAGGAGTCCACTCTTCATCTGGTGTTGCGTCTGAGGGGTGG 39948
>seq73986
Length=64159
Score = 86.0 bits (94), Expect = 6e-12
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921
|| |||||||| || ||||||||||| || ||||| |||| | || || ||| | |||
Sbjct 17171 GATAAAGAAGGTATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAA 17112
Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|||| | | | | || |||||||| || || |||||||| || | || |||| |
Sbjct 17111 GATGGCCGTA-CTTTGGCTGACTATAATATCCAGAAAGAATCAACACTTCACTTGGTTTT 17053
Query 26981 GAGACTTAGAGGAGGAAAAAT 27001
||| ||||||||||||| |||
Sbjct 17052 GAGGCTTAGAGGAGGAACAAT 17032
>seq73807
Length=69832
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| || || | ||||| || | || || ||||| ||||
Sbjct 40066 ATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACAATAACTCTCGAAGTAGAGAGTTCT 40007
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| || || | |||||| ||| ||| ||||| ||||| || || || |||||
Sbjct 40006 GACACTATTGATAATGTCAAAGCAAAAATTCAAGACAAGGAAGGAATTCCCCCTGATCAG 39947
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| ||| | || | | ||||||||||| || |||| | | | | | || ||||||
Sbjct 39946 CAGAGATTGATCTTTGCTGGCAAACAACTGGAGGATGGTCGTACCCTTGCAGATTATAAC 39887
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| ||||| || || || ||||||| ||| |||| ||| | || ||
Sbjct 39886 ATACAAAAGGAGTCCACCCTCCATCTTGTCTTGAGGCTTCGGGGTGG 39840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478187913929440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |