Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq72241 100 3e-16 seq73986 86.0 6e-12 seq73807 86.0 6e-12 >seq72241 Length=55963 Score = 100 bits (110), Expect = 3e-16 Identities = 164/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 26753 TTTTTAGTCAAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCA 26811 || |||| ||| ||| ||||| | || || ||||| |||| || || | || ||| Sbjct 40875 TTGTTAGGTAAAGAAAGATGCAGATCTTCGTGAAAACCCTAACCGGTAAGACAATTACCC 40816 Query 26812 TCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAG 26871 | || | || ||| || ||||| | ||||| |||||| ||||| || | Sbjct 40815 TTGAGGTCGAGAGCTCCGATACAATCGACAATGTCAAGGCTAAGATTCAAGACAAGGAGG 40756 Query 26872 GGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA 26931 | || ||||||||||| || | || || | || ||||||||||||||| || | ||| Sbjct 40755 GAATCCCTCCCGATCAGCAGCGCCTAATCTTCGCCGGCAAACAACTCGAGGACGGCCGAA 40696 Query 26932 ACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 | || ||| ||||| || || || || |||||| ||||||| ||||| ||||| Sbjct 40695 CCCTCGCCGATTATAATATCCAGAAGGAGTCTACTCTCCATCTTGTCCTCAGACT 40641 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | ||||| ||||||| || ||||||||||| ||||| |||||| Sbjct 40114 GATACCATCGATAATGTCAAGGCAAAGATTCAGGATAAAGAAGGGATTCCTCCGGATCAA 40055 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 |||||||| || | | ||| || || | ||||| | | | || ||| || ||||| Sbjct 40054 CAAAGACTGATCTTTGCCGGGAAGCAGTTGGAAGACGGTCG-TACTCTAGCTGATTATAA 39996 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||| || || ||| | |||||||| || | || || || || Sbjct 39995 CATTCAAAAGGAGTCCACTCTTCATCTGGTGTTGCGTCTGAGGGGTGG 39948 >seq73986 Length=64159 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 || |||||||| || ||||||||||| || ||||| |||| | || || ||| | ||| Sbjct 17171 GATAAAGAAGGTATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAA 17112 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | | | | || |||||||| || || |||||||| || | || |||| | Sbjct 17111 GATGGCCGTA-CTTTGGCTGACTATAATATCCAGAAAGAATCAACACTTCACTTGGTTTT 17053 Query 26981 GAGACTTAGAGGAGGAAAAAT 27001 ||| ||||||||||||| ||| Sbjct 17052 GAGGCTTAGAGGAGGAACAAT 17032 >seq73807 Length=69832 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | ||||| || | || || ||||| |||| Sbjct 40066 ATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACAATAACTCTCGAAGTAGAGAGTTCT 40007 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| ||| ||| ||||| ||||| || || || ||||| Sbjct 40006 GACACTATTGATAATGTCAAAGCAAAAATTCAAGACAAGGAAGGAATTCCCCCTGATCAG 39947 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | | ||||||||||| || |||| | | | | | || |||||| Sbjct 39946 CAGAGATTGATCTTTGCTGGCAAACAACTGGAGGATGGTCGTACCCTTGCAGATTATAAC 39887 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || || ||||||| ||| |||| ||| | || || Sbjct 39886 ATACAAAAGGAGTCCACCCTCCATCTTGTCTTGAGGCTTCGGGGTGG 39840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478187913929440