Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq72241 107 2e-18 seq65811 100 2e-16 seq73986 96.9 3e-15 seq67817 84.2 2e-11 seq42370 84.2 2e-11 >seq72241 Length=55963 Score = 107 bits (118), Expect = 2e-18 Identities = 153/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 23975 TTTTTAGCCAAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCA 24033 || |||| ||| ||| ||||| | || || ||||| |||| || || | |||||| Sbjct 40875 TTGTTAGGTAAAGAAAGATGCAGATCTTCGTGAAAACCCTAACCGGTAAGACAATTACCC 40816 Query 24034 TCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAG 24093 | || |||||| | ||| || ||||| | ||||| |||||| ||||| || | Sbjct 40815 TTGAGGTCGAGAGCTCCGATACAATCGACAATGTCAAGGCTAAGATTCAAGACAAGGAGG 40756 Query 24094 GCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA 24153 | || ||||||||||| ||| | || || | || |||||| |||||||| || | | ||| Sbjct 40755 GAATCCCTCCCGATCAGCAGCGCCTAATCTTCGCCGGCAAACAACTCGAGGACGGCCGAA 40696 Query 24154 ACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | || ||||||||| || || || || ||||| Sbjct 40695 CCCTCGCCGATTATAATATCCAGAAGGAGTCTAC 40662 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| ||| | ||||| | || || || Sbjct 40174 ATGCAGATTTTTGTCAAGACCCTTACTGGTAAAACTATTACTCTTGAGGTTGAAAGTTCT 40115 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | ||||| ||||||| || |||||||| || ||||| |||||| Sbjct 40114 GATACCATCGATAATGTCAAGGCAAAGATTCAGGATAAAGAAGGGATTCCTCCGGATCAA 40055 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || |||||||| | | ||| ||||| | ||||| | | | | ||| |||||||| Sbjct 40054 CAAAGACTGATCTTTGCCGGGAAGCAGTTGGAAGACGGTCGTACTCT-AGCTGATTATAA 39996 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||||||| || || || ||||| | ||||| Sbjct 39995 CATTCAAAAGGAGTCCACTCTTCATCTGGTGTT 39963 >seq65811 Length=66007 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || || ||||| | || || ||||||| ||| | | Sbjct 55235 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACCATCACGCTCGAAGTTGAGAGCTCC 55176 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || || ||| ||||| |||||||| || || || || Sbjct 55175 GACACCATCGACAACGTAAAGGCTAAAATTCAAGACAAGGAAGGCATTCCACCAGACCAG 55116 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | || ||| ||||| ||||| || | | | | | | ||| || || Sbjct 55115 CAAAGATTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTACAAT 55056 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| ||||| || |||| || ||| Sbjct 55055 ATTCAAAAGGAATCCACCCTTCACTTGGTG 55026 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| | || || ||||||||||| | | Sbjct 55463 ATGCAGATCTTCGTTAAGACTCTTACCGGAAAGACCATCACTCTCGAAGTCGAGAGCTCC 55404 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| || || || || || ||||| || || Sbjct 55403 GACACCATCGATAACGTCAAGGCAAAGATCCAGGATAAGGAGGGAATTCCTCCAGACCAG 55344 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || ||||| | | ||| ||||| ||||| || | ||||| | | ||||| ||| Sbjct 55343 CAAAGGCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTTGCGGATTACAAC 55284 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| || ||||| | || || || | | ||||| ||||| Sbjct 55283 ATTCAAAAGGAGTCTACCCTCCACTTGGTCCTCCGTTTGAGGGGAGG 55237 >seq73986 Length=64159 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || |||||||| || ||||||||||| ||||||||||||| | || |||||| | ||| Sbjct 17171 GATAAAGAAGGTATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAA 17112 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| | | || | || || ||||| || || |||||||| ||| |||| || || || Sbjct 17111 GATGGCCG-TACTTTGGCTGACTATAATATCCAGAAAGAATCAACACTTCACTTGGTTTT 17053 Query 24203 AAGATTGAGAGGAGGACTATAATGAT 24228 || | ||||||||| | |||||| Sbjct 17052 GAGGCTTAGAGGAGGA--ACAATGAT 17029 >seq67817 Length=4127 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||| | | || || ||||| | || || || | || ||| | || ||||| | Sbjct 1617 CAAAATGTAGATCTTCGTGAAAACCCTCACGGGGAAGACCATCACCCTTGAGGTCGAATC 1558 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | | | ||||| || | ||||| || ||| | ||||| || ||||| || || || Sbjct 1557 CTCCAATACCATTGACAATGTCAAGGCCAAAATTTCGGACAAGGAGGGCATCCCACCAGA 1498 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATT 24165 || ||| | || || | || ||| |||||||||||||| |||| ||| ||| || | Sbjct 1497 CCAGCAGCGTCTCATCTTCGCCGGGAAGCAACTCGAAGACTACAG-AACACTAGCTGACT 1439 Query 24166 ATAACATTCAAAAAGAATCTACAATTCA 24193 | ||||| || || ||||| || ||||| Sbjct 1438 ACAACATCCAGAAGGAATCCACCATTCA 1411 >seq42370 Length=41228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| ||| | ||||| | || || || Sbjct 10434 ATGCAGATTTTTGTTAAGACCCTCACTGGTAAAACCATTACTCTTGAGGTTGAAAGTTCT 10493 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || ||||||| || || ||||| || ||||| || || Sbjct 10494 GATACAATTGATAATGTTAAGGCAAAGATTCAGGATAAGGAAGGGATTCCTCCGGACCAG 10553 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||| |||| | | ||| ||||| | ||||||| ||||| | ||| |||||||| Sbjct 10554 CAGAGATTGATCTTTGCCGGGAAGCAGTTGGAAGATGGCAGAACTCT-AGCTGATTATAA 10612 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||| || || || ||||| | ||| | | ||||||| || Sbjct 10613 CATTCAAAAGGAGTCCACCCTTCATCTGGTGCTGCGTCTGAGAGGTGG 10660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429520469811810