Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq73807 98.7 8e-16 seq42370 98.7 8e-16 seq72241 91.5 1e-13 >seq73807 Length=69832 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA--ACGGAGTCCA 115343 ||||| || ||||| || || ||||| || || || || || ||||| | |||| | Sbjct 40066 ATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACAATAACTCTCGAAGTAGAGAGTTCT 40007 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | ||||| ||| | || ||| ||||||| || || ||||| | ||| ||||| Sbjct 40006 G--ACACTATTGATAATGTCAAAGCAAAAATTCAAGACAAGGAAGGAATTCCCCCTGATC 39949 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| ||| | || | ||| ||||||||| | || |||| ||| | || ||||||| Sbjct 39948 AGCAGAGATTGATCTTTGCTGGCAAACAACTGGAGGATGGTCGTACCCTTGCAGATTATA 39889 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 |||| ||||| ||||| || | ||| | || ||||| Sbjct 39888 ACATACAAAAGGAGTCCACCCTCCATCTTGTCTTGAG 39852 >seq42370 Length=41228 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| || || ||||| || ||||| |||| ||| | Sbjct 9978 ATGCAGATATTTGTTAAAACCCTAACCGGAAAGACGATTACTCTCGAGGTTGAGAGTTCC 10037 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| || || |||||| ||||| ||||| |||| || || Sbjct 10038 GACACTATTG-ACAACGTCAAGGCTAAAATTCAGGATAAGGAAGGGATCCCTCCGGACCA 10096 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| || || | ||| || || ||||| || |||| | || | |||||||| || Sbjct 10097 GCAAAGGCTCATCTTTGCTGGGAAGCAATTGGAGGATGGCCGGACTCTTGCCGATTACAA 10156 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 |||||||||||||| || | ||| | || ||||| Sbjct 10157 TATTCAAAAAGAGTCGACCCTTCATCTCGTCTTGAG 10192 >seq72241 Length=55963 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGG--AGTCCA 115343 |||||||||||||||||||| || || || |||||||| || | || || ||| | Sbjct 40402 ATGCAAATTTTTGTCAAAACTCTAACAGGCAAAACCATCACTCTTGAGGTGGAAAGTTC- 40344 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || ||| || ||||| || || ||| ||| ||||| ||||| | || |||| Sbjct 40343 -TGATACTATT-GACAACGTTAAGGCAAAGATTCAAGATAAGGAAGGAATTCCTCCTGAT 40286 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| | || |||| || || || || | ||||| | | |||| | || ||||| Sbjct 40285 CAGCAGCGCCTAATTTTCGCCGGGAAGCAGCTGGAAGACGGTAGAACCCTTGCGGATTAC 40226 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| || ||||| || ||||| | || ||||| | ||||| || Sbjct 40225 AATATTCAGAAGGAGTCAACCCTACATCTTGTCTTGAGGCTTCGAGGGGG 40176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932907948240