Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq73807 98.7 8e-16 seq65811 96.9 3e-15 seq42370 91.5 1e-13 seq53817 84.2 2e-11 >seq73807 Length=69832 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || |||| || | || || |||||||||||||| || |||||||| || Sbjct 39155 CCCACCACGGAGTCTCAAGACAAGGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCTGC 39214 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | | ||||| | |||||| || ||| |||| | || || ||||| || Sbjct 39215 CAGGGTACGGCCATCCTCAAGTTGTTTCCCTGCAAAAATCAAGCGTTGCTGGTCTGGGGG 39274 Query 16828 CACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||||| ||||| ||||| ||| || || | | | | ||||| | || Sbjct 39275 AATTCCCTCCTTGTCCTGAATTTTGGCT--TTAACGTTGTCAATTGTGTCTGAGCTTTCA 39332 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||| ||||| ||||| ||||| || |||||||| |||||||| Sbjct 39333 ACTTCAAGGGTAATGGTCTTTCCTGTCAGAGTCTTGACAAAGATCTGCAT 39382 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || |||| || | ||| || |||||||||||||||||||||||||| || Sbjct 39612 CCACCACGAAGTCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTGTAGTCTGCA 39671 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||| |||||| || || |||| | | || ||||| || Sbjct 39672 AGGGTACGGCCATCCTCCAGTTGTTTCCCTGCGAAAATCAATCTTTGCTGGTCTGGGGGA 39731 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || ||| || || | | | | ||||| | || Sbjct 39732 ATTCCCTCCTTGTCCTGGATTTTGGCT--TTGACATTGTCAATTGTGTCTGAGCTTTCAA 39789 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||| ||||| ||||| || || ||||| || ||||| Sbjct 39790 CTTCAAGGGTGATGGTCTTTCCTGTCAGGGTCTTAACAAAGATTTGCAT 39838 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| ||||| ||||||||||| || || || ||||| || Sbjct 38700 CCTCCACGAAGACGAAGAACCAAGTGCAGGGTGGACTCCTTCTGGATATTATAGTCCGCA 38759 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | ||||| | || ||||| ||| | ||||||| |||||| || ||| Sbjct 38760 AGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGAGGA 38819 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGC-TTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | || || ||||| ||||| ||| ||||| | | | ||| || | |||| Sbjct 38820 ATTCCTTCCTTGTCCTGAATTT-TTGCTTTCACATTATCAATAGTATCTGAGCTCTCCAC 38878 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || || || || || || || ||||| ||||| Sbjct 38879 CTCCAAAGTGATTGTCTTCCCTGTAAGTGTCTTCACGAAAATTTGCAT 38926 >seq65811 Length=66007 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||| ||||| || ||||||||||| |||| ||| | |||| Sbjct 54796 AGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCCGTCT 54855 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || ||| | || | || ||| ||||| || | ||||| ||||| Sbjct 54856 TCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCT 54915 Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 ||| | ||| ||||| | | | | |||||| | ||| |||| |||||||| Sbjct 54916 TGAATCTTGGCT--TTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGG 54973 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||||| || || |||||||| || ||||| Sbjct 54974 TTTTTCCGGTGAGAGTCTTGACAAAGATTTGCAT 55007 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || ||||| |||||||| || |||||||||||| Sbjct 55009 CCTCCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCGGCC 55068 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || || || || | || | | || ||||| || Sbjct 55069 AAGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGGA 55128 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| ||||| ||| || | | | | |||||| | ||| | Sbjct 55129 ATGCCTTCCTTGTCTTGAATTTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCAACT 55188 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| |||||||||| || |||||||| || ||||| Sbjct 55189 TCGAGCGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 55235 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||||||||| |||||||| || || | |||| || ||||| Sbjct 55252 AGGACCAAGTGGAGGGTAGACTCCTTTTGAATGTTGTAATCCGCAAGGGTTCTGCCGTCC 55311 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || ||| | || |||| || ||||| ||| | ||||| || || Sbjct 55312 TCGAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCC 55371 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | |||||| | ||| ||| | ||||||| Sbjct 55372 TGGATCTTTGC--CTTGACGTTATCGATGGTGTCGGAGCTCTCGACTTCGAGAGTGATGG 55429 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||||||| || || || || || |||||||| Sbjct 55430 TCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 55463 >seq42370 Length=41228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || ||||||| || | ||| || || ||||| ||||| || ||||| ||||| Sbjct 10205 CCCACCGCGAAGCCTCAAGACGAGATGAAGGGTCGACTCTTTTTGAATATTGTAATCGGC 10146 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | ||||||||||| || || ||| | || |||| || |||||| ||| Sbjct 10145 AAGAGTCCGGCCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGAGG 10086 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | || || || || ||||| ||| || | | | | ||||||| ||| Sbjct 10085 GATCCCTTCCTTATCCTGAATTTTAGCCTTGACGTTGTCAATAGTGTCGGAACTCTCAAC 10026 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || || || |||||||| || ||||| ||||| |||||||| Sbjct 10025 CTCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTAACAAATATCTGCAT 9978 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || || ||||| |||||||| || ||||| | |||| | ||||| Sbjct 9961 AGAACAAGATGAAGGGTTGATTCCTTCTGTATGTTATAATCGGCTAGGGTTCGGCCGTCC 9902 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||||||||||||| || | ||||| ||||| || ||| ||| | ||||| || || Sbjct 9901 TCCAATTGTTTGCCGGCGAAGATAAGGCGCTGCTGATCCGGAGGGATACCCTCCTTATCT 9842 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||| ||| ||| || | || |||| Sbjct 9841 TGGATCTTAGC--CTTGACATTATCAATAGTATCGGAACTCTCAACCTCGAGAGTTATGG 9784 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | || || || || ||||| || || ||||||||| Sbjct 9783 TCTTGCCTGTTAGGGTTTTCACGAAGATCTGCATT 9749 >seq53817 Length=15024 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| ||||| || ||||||||||| || | ||| || |||| || | || Sbjct 3654 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTTCTGCCGTCTTCGAGCTGC 3713 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || || ||||| |||||| || | |||||| ||||| ||||| Sbjct 3714 TTACCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATTTTG 3773 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | || || || || || | ||||||||| || || || Sbjct 3774 GCCTTGACATTGTCAATGGTATCCGAGGATTCGACCTCAAGGGTGATGGTCTTCCCCGTG 3833 Query 16913 AGCGTTTTGACAAAAATCTGCATTTT 16938 || ||||| || || ||||||||||| Sbjct 3834 AGGGTTTTCACGAAGATCTGCATTTT 3859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404696485232980