Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq35021 205 1e-47 seq39070 178 2e-39 seq67281 89.7 7e-13 seq50219 89.7 7e-13 seq42762 89.7 7e-13 seq40763 89.7 7e-13 >seq35021 Length=73443 Score = 205 bits (226), Expect = 1e-47 Identities = 576/876 (66%), Gaps = 20/876 (2%) Strand=Plus/Plus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 ||||| ||||| ||||| | || ||||| ||||| || || || | || || | Sbjct 65760 TTTTGATATTCTCCCACTCTCTTCTCGAAGAAATTCGTCTTCCCCTGCAAACTAATCAAT 65819 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||| ||||||||||||| ||||||||| || ||| | ||||||| | || | Sbjct 65820 TCCATCCAATCGAATGGATTCAGAACATTATACATCTTTCGATATCCCAAAGCTTCAAGC 65879 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 ||||| ||||| || ||||| || || |||| | || | ||||| || | || Sbjct 65880 AATCTGTCTGCAACGAATTCAATGTACTGGCTCATTAGATCTCCGTTCATACCAACTAGG 65939 Query 32550 TTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 32607 | || ||||| | ||| | |||||| || ||| || || || | || | Sbjct 65940 GCACAAGGCAGAGCATCGCAG--ACGAATTCTCTCTCGATATCAACTGCATCCGCTACGA 65997 Query 32608 TAGATCTTACTGTTTCTTCACTCGGTGGATACAAT----AAATGTTTAAACATCAAACAT 32663 | || ||| ||||| ||||| | || | | | | | | || || Sbjct 65998 T---TCCC-CTGATTCTTTCCTCGGAAAGTTTCATCCGCAGAAGACTGTAGAGTAAGCAA 66053 Query 32664 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 32723 |||||||||||||| ||||| ||||||| ||||| ||||| || || || |||||| Sbjct 66054 GCGAAATCGCAGTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGTCCG 66113 Query 32724 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGAAAAT 32782 ||||| |||||||| || || | ||||||||| | |||||| ||| || || || || Sbjct 66114 GGCATAAGGCCACGTTTCTTTAACCAAAATATCG-CGCAAAAACTCCCCGAGAAAAATAT 66172 Query 32783 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTAT 32839 |||||| || || ||||| | | | || || | | | || ||| || Sbjct 66173 TCCTTCGACACAAGCGAAGGCGACTATACGTTCGGCAAAGGATTCCGAGCCGTCG---AT 66229 Query 32840 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 ||| | ||||| | ||||||||||| || ||||| ||||| || || || ||| Sbjct 66230 CCAACGAAGTGCCCATTTGGCCTTCTTTTCAACGCAAGGAATTGTTTCGATTGCGCGAAA 66289 Query 32900 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 32959 ||| ||| || ||||| || || | || | || | ||| ||||||||||| || Sbjct 66290 GAGTCTGTTCTTCTCATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATACATCTC 66349 Query 32960 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTG 33019 || ||||| || || ||||| ||||| || ||||| ||| | || |||| |||||| Sbjct 66350 GGAGTGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAAATCTG 66409 Query 33020 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 33079 |||||| | ||||| | || | ||| || || || || ||| || || || Sbjct 66410 AACTTCTTTCATGAATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAGCGGCGAA 66469 Query 33080 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 33139 || || | || || | || || | ||||| || || || | ||| | | Sbjct 66470 GAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCCATTGACG 66529 Query 33140 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33199 || || | ||||| ||| || || || | ||||| || || ||||||||||| || || Sbjct 66530 GAGGTCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCTTCTTGTA 66589 Query 33200 CATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 ||| | ||| || | | | ||||||||||| || || Sbjct 66590 CATCTCCCAAATCTGAGGGTATTGAATTGGGAACAT 66625 >seq39070 Length=11651 Score = 178 bits (196), Expect = 2e-39 Identities = 399/597 (67%), Gaps = 2/597 (0%) Strand=Plus/Minus Query 32658 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 32717 || || || || || || || || || || |||| | |||||| ||||| || || || Sbjct 7937 AAGCAGGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTT 7878 Query 32718 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAA 32776 | ||||||||| || || || || || ||||||||||| | | |||| ||| || || Sbjct 7877 AATCCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCG-CACAAAAACTCCCCGAGAA 7819 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG 32836 || ||||| || || |||||||| | | | ||| || | | | ||| Sbjct 7818 AAATATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATC 7759 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| | ||||||| ||||||||||| |||||||| || ||||| || ||| Sbjct 7758 GATCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACG 7699 Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956 |||||| | || || | ||| || | || | || | ||| ||||||||||| Sbjct 7698 AAAGAGCCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCAATAGACTATACAT 7639 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT 33016 || || ||||| || || || || |||||||| ||||| ||| | ||||| | ||| Sbjct 7638 CTCGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGAAAT 7579 Query 33017 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 33076 || |||||| | ||||| | || | ||| || || || || ||| || || Sbjct 7578 TTGAACTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAGCGGC 7519 Query 33077 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 33136 |||||| || | || || | || || | ||||| || ||||| | ||| | Sbjct 7518 AAAAAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTTCCCATTG 7459 Query 33137 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 33196 || || | ||| | ||| ||||| || ||||||| || || ||||| ||||| || Sbjct 7458 GCGGAGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGGCCTTCTT 7399 Query 33197 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 33253 ||||| | ||| || | | | ||||||||||| || ||| |||| | |||||| Sbjct 7398 GTACATTTCCCAAATCTGAGGGTATTGAATTGGGAACATACAGAATCGGTCTGGATT 7342 >seq67281 Length=7088 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | || | ||| |||| ||| | || | | |||||||| ||| ||| Sbjct 7043 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCCA 6984 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| ||||| || ||| || || |||||| |||| || || || || ||| Sbjct 6983 TTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGAT 6924 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | || || || || || ||| ||| | || ||| || | |||||||| || Sbjct 6923 ACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATATT 6864 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||||| || || ||||| ||||| | ||||| |||||| Sbjct 6863 CCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 6822 >seq50219 Length=1725 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | || | ||| |||| ||| | || | | |||||||| ||| ||| Sbjct 1203 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCCA 1262 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| ||||| || ||| || || |||||| |||| || || || || ||| Sbjct 1263 TTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGAT 1322 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | || || || || || ||| ||| | || ||| || | |||||||| || Sbjct 1323 ACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATATT 1382 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||||| || || ||||| ||||| | ||||| |||||| Sbjct 1383 CCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 1424 >seq42762 Length=1633 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | || | ||| |||| ||| | || | | |||||||| ||| ||| Sbjct 1111 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCCA 1170 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| ||||| || ||| || || |||||| |||| || || || || ||| Sbjct 1171 TTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGAT 1230 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | || || || || || ||| ||| | || ||| || | |||||||| || Sbjct 1231 ACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATATT 1290 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||||| || || ||||| ||||| | ||||| |||||| Sbjct 1291 CCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 1332 >seq40763 Length=101153 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | || | ||| |||| ||| | || | | |||||||| ||| ||| Sbjct 101108 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCCA 101049 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| ||||| || ||| || || |||||| |||| || || || || ||| Sbjct 101048 TTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGAT 100989 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | || || || || || ||| ||| | || ||| || | |||||||| || Sbjct 100988 ACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATATT 100929 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||||| || || ||||| ||||| | ||||| |||||| Sbjct 100928 CCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 100887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633003896439200