Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq35021 205 1e-47
seq39070 178 2e-39
seq67281 89.7 7e-13
seq50219 89.7 7e-13
seq42762 89.7 7e-13
seq40763 89.7 7e-13
>seq35021
Length=73443
Score = 205 bits (226), Expect = 1e-47
Identities = 576/876 (66%), Gaps = 20/876 (2%)
Strand=Plus/Plus
Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429
||||| ||||| ||||| | || ||||| ||||| || || || | || || |
Sbjct 65760 TTTTGATATTCTCCCACTCTCTTCTCGAAGAAATTCGTCTTCCCCTGCAAACTAATCAAT 65819
Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489
||||| ||||||||||||| ||||||||| || ||| | ||||||| | || |
Sbjct 65820 TCCATCCAATCGAATGGATTCAGAACATTATACATCTTTCGATATCCCAAAGCTTCAAGC 65879
Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549
||||| ||||| || ||||| || || |||| | || | ||||| || | ||
Sbjct 65880 AATCTGTCTGCAACGAATTCAATGTACTGGCTCATTAGATCTCCGTTCATACCAACTAGG 65939
Query 32550 TTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 32607
| || ||||| | ||| | |||||| || ||| || || || | || |
Sbjct 65940 GCACAAGGCAGAGCATCGCAG--ACGAATTCTCTCTCGATATCAACTGCATCCGCTACGA 65997
Query 32608 TAGATCTTACTGTTTCTTCACTCGGTGGATACAAT----AAATGTTTAAACATCAAACAT 32663
| || ||| ||||| ||||| | || | | | | | | || ||
Sbjct 65998 T---TCCC-CTGATTCTTTCCTCGGAAAGTTTCATCCGCAGAAGACTGTAGAGTAAGCAA 66053
Query 32664 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 32723
|||||||||||||| ||||| ||||||| ||||| ||||| || || || ||||||
Sbjct 66054 GCGAAATCGCAGTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGTCCG 66113
Query 32724 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGAAAAT 32782
||||| |||||||| || || | ||||||||| | |||||| ||| || || || ||
Sbjct 66114 GGCATAAGGCCACGTTTCTTTAACCAAAATATCG-CGCAAAAACTCCCCGAGAAAAATAT 66172
Query 32783 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTAT 32839
|||||| || || ||||| | | | || || | | | || ||| ||
Sbjct 66173 TCCTTCGACACAAGCGAAGGCGACTATACGTTCGGCAAAGGATTCCGAGCCGTCG---AT 66229
Query 32840 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899
||| | ||||| | ||||||||||| || ||||| ||||| || || || |||
Sbjct 66230 CCAACGAAGTGCCCATTTGGCCTTCTTTTCAACGCAAGGAATTGTTTCGATTGCGCGAAA 66289
Query 32900 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 32959
||| ||| || ||||| || || | || | || | ||| ||||||||||| ||
Sbjct 66290 GAGTCTGTTCTTCTCATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATACATCTC 66349
Query 32960 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTG 33019
|| ||||| || || ||||| ||||| || ||||| ||| | || |||| ||||||
Sbjct 66350 GGAGTGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAAATCTG 66409
Query 33020 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 33079
|||||| | ||||| | || | ||| || || || || ||| || || ||
Sbjct 66410 AACTTCTTTCATGAATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAGCGGCGAA 66469
Query 33080 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 33139
|| || | || || | || || | ||||| || || || | ||| | |
Sbjct 66470 GAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCCATTGACG 66529
Query 33140 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33199
|| || | ||||| ||| || || || | ||||| || || ||||||||||| || ||
Sbjct 66530 GAGGTCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCTTCTTGTA 66589
Query 33200 CATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235
||| | ||| || | | | ||||||||||| || ||
Sbjct 66590 CATCTCCCAAATCTGAGGGTATTGAATTGGGAACAT 66625
>seq39070
Length=11651
Score = 178 bits (196), Expect = 2e-39
Identities = 399/597 (67%), Gaps = 2/597 (0%)
Strand=Plus/Minus
Query 32658 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 32717
|| || || || || || || || || || |||| | |||||| ||||| || || ||
Sbjct 7937 AAGCAGGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTT 7878
Query 32718 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAA 32776
| ||||||||| || || || || || ||||||||||| | | |||| ||| || ||
Sbjct 7877 AATCCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCG-CACAAAAACTCCCCGAGAA 7819
Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG 32836
|| ||||| || || |||||||| | | | ||| || | | | |||
Sbjct 7818 AAATATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATC 7759
Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896
||||| | ||||||| ||||||||||| |||||||| || ||||| || |||
Sbjct 7758 GATCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACG 7699
Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956
|||||| | || || | ||| || | || | || | ||| |||||||||||
Sbjct 7698 AAAGAGCCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCAATAGACTATACAT 7639
Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT 33016
|| || ||||| || || || || |||||||| ||||| ||| | ||||| | |||
Sbjct 7638 CTCGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGAAAT 7579
Query 33017 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 33076
|| |||||| | ||||| | || | ||| || || || || ||| || ||
Sbjct 7578 TTGAACTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAGCGGC 7519
Query 33077 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 33136
|||||| || | || || | || || | ||||| || ||||| | ||| |
Sbjct 7518 AAAAAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTTCCCATTG 7459
Query 33137 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 33196
|| || | ||| | ||| ||||| || ||||||| || || ||||| ||||| ||
Sbjct 7458 GCGGAGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGGCCTTCTT 7399
Query 33197 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 33253
||||| | ||| || | | | ||||||||||| || ||| |||| | ||||||
Sbjct 7398 GTACATTTCCCAAATCTGAGGGTATTGAATTGGGAACATACAGAATCGGTCTGGATT 7342
>seq67281
Length=7088
Score = 89.7 bits (98), Expect = 7e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
||||| ||||| | || | ||| |||| ||| | || | | |||||||| ||| |||
Sbjct 7043 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCCA 6984
Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346
|||||||| ||||| || ||| || || |||||| |||| || || || || |||
Sbjct 6983 TTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGAT 6924
Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406
| || || || || || ||| ||| | || ||| || | |||||||| ||
Sbjct 6923 ACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATATT 6864
Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448
||||| || || ||||| ||||| | ||||| ||||||
Sbjct 6863 CCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 6822
>seq50219
Length=1725
Score = 89.7 bits (98), Expect = 7e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
||||| ||||| | || | ||| |||| ||| | || | | |||||||| ||| |||
Sbjct 1203 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCCA 1262
Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346
|||||||| ||||| || ||| || || |||||| |||| || || || || |||
Sbjct 1263 TTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGAT 1322
Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406
| || || || || || ||| ||| | || ||| || | |||||||| ||
Sbjct 1323 ACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATATT 1382
Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448
||||| || || ||||| ||||| | ||||| ||||||
Sbjct 1383 CCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 1424
>seq42762
Length=1633
Score = 89.7 bits (98), Expect = 7e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
||||| ||||| | || | ||| |||| ||| | || | | |||||||| ||| |||
Sbjct 1111 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCCA 1170
Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346
|||||||| ||||| || ||| || || |||||| |||| || || || || |||
Sbjct 1171 TTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGAT 1230
Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406
| || || || || || ||| ||| | || ||| || | |||||||| ||
Sbjct 1231 ACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATATT 1290
Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448
||||| || || ||||| ||||| | ||||| ||||||
Sbjct 1291 CCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 1332
>seq40763
Length=101153
Score = 89.7 bits (98), Expect = 7e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
||||| ||||| | || | ||| |||| ||| | || | | |||||||| ||| |||
Sbjct 101108 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCCA 101049
Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346
|||||||| ||||| || ||| || || |||||| |||| || || || || |||
Sbjct 101048 TTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGAT 100989
Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406
| || || || || || ||| ||| | || ||| || | |||||||| ||
Sbjct 100988 ACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATATT 100929
Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448
||||| || || ||||| ||||| | ||||| ||||||
Sbjct 100928 CCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 100887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633003896439200
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