Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq65811 134 1e-26 seq73807 114 1e-20 seq42370 111 1e-19 seq72241 107 2e-18 >seq65811 Length=66007 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||||||| || ||||||| ||||||| ||| || Sbjct 55235 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACCATCACGCTCGAAGTTGAGAGCTCC 55176 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| | |||| ||| ||||| ||||| |||||||| ||||| Sbjct 55175 GACACCATCGACAACGTAAAGGCTAAAATTCAA-GACAAGGAAGGCATTCCACCAGACCA 55117 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | || || ||||| || || | || || | ||||| ||| ||| ||||| Sbjct 55116 GCAAAGATTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTACAA 55057 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| |||||||| || || || ||||| Sbjct 55056 TATTCAAAAGGAATCCACCCTTCACTTGGTGCT 55024 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| ||||||||||| | ||||| | || |||||| || Sbjct 54581 AATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACTATCACCCTGGAGGTGGAGAGCTC 54522 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || || ||||| ||||||| ||||| || || |||||||| ||||| Sbjct 54521 TGACACCATTGACAATGTGAAGGCAAAAATCCAAGACAAGGAGGGAATTCCACCAGACCA 54462 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || | ||||||| | ||| ||| || ||||| Sbjct 54461 GCAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGAAGGACTTTGGCTGACTACAA 54402 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || ||| | || || Sbjct 54401 TATCCAGAAGGAGTCAACACTCCATCTTGTCCT 54369 >seq73807 Length=69832 Score = 114 bits (126), Expect = 1e-20 Identities = 160/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || | || || ||||||| ||| ||| Sbjct 40066 ATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACAATAACTCTCGAAGTAGAGAGTTCT 40007 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| ||||||||| ||| ||||| ||||| ||||| ||||| Sbjct 40006 GACACTATTGATAATGTCA---AAGCAAAAATTCA-AGACAAGGAAGGAATTCCCCCTGA 39951 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| | | || ||||| ||||||||| | || |||| ||| || | | ||||| Sbjct 39950 TCAGCAGAGATTGATCTTTGCTGGCAAACAACTGGAGGATGGTCGTACCCTTGCAGATTA 39891 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || ||||| || ||||| || ||| | || | ||||| Sbjct 39890 TAACATACAAAAGGAGTCCACCCTCCATCTTGTCTTGAGGCT 39849 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| || || ||||||| | ||||| || || Sbjct 39610 ATGCAAATCTTCGTTAAGACCCTGACAGGAAAGACCATCACCCTGGAAGTCGAAAGCTCA 39551 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || |||| |||| ||| ||||| || || ||||| ||||| Sbjct 39550 GACACAATTGA--CAATGTCAAAGCCAAAATTCAG-GACAAGGAGGGAATTCCCCCTGAT 39494 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | |||||||| || ||||| | || |||| || || | | || ||| Sbjct 39493 CAGCAACGTTTGATTTTTGCTGGGAAACAGCTTGAGGATGGCCGTACCCTTGCAGACTAC 39434 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 ||||||||||| || ||||| || || Sbjct 39433 AATATTCAAAAGGAGTCCACCCTTCA 39408 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || || | || | ||||| || ||| Sbjct 39154 ATGCAGATCTTTGTCAAGACTCTTACTGGGAAGACCGTTACCCTAGAAGTAGAAAGCTCT 39095 Query 25059 GACACTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || | || | | || || | ||| ||||||||||| ||||| ||||||| Sbjct 39094 GATACGATTGA-TAACGTTAAGGCTAAGATTCAA-GACAAAGAAGGCATTCCCCCTGACC 39037 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || |||||||| ||||| | || |||| | | || | | ||||| | Sbjct 39036 AGCAGCGTCTGATATTTGCCGGTAAACAGCTTGAGGATGGTAGGACACTTGCTGATTATA 38977 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 | || ||||| || || || || ||||| ||| Sbjct 38976 ACATCCAAAAGGAGTCAACTCTGCATTTGGTG 38945 >seq42370 Length=41228 Score = 111 bits (122), Expect = 1e-19 Identities = 159/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || | ||||| || | || || |||| || ||| || Sbjct 9978 ATGCAGATATTTGTTAAAACCCTAACCGGAAAGACGATTACTCTCGAGGTTGAGAGTTCC 10037 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| | || |||| ||| || || |||||||| || || || Sbjct 10038 GACACTATTGACAACGTCA---AGGCTAAAATTCAG-GATAAGGAAGGGATCCCTCCGGA 10093 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || | || ||||| || || ||||| || |||| || ||| | | |||||| Sbjct 10094 CCAGCAAAGGCTCATCTTTGCTGGGAAGCAATTGGAGGATGGCCGGACTCTTGCCGATTA 10153 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||||||||||||| || || || ||| | || | ||||| Sbjct 10154 CAATATTCAAAAAGAGTCGACCCTTCATCTCGTCTTGAGGCT 10195 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || |||||| |||| || | || || || ||| Sbjct 10434 ATGCAGATTTTTGTTAAGACCCTCACTGGTAAAACCATTACTCTTGAGGTTGAAAGTTCT 10493 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| |||| | ||| || || ||||||||||| || ||||| Sbjct 10494 GATACAATTGATAATGTTAAGGCAAAGATTCAG-GATAAGGAAGGGATTCCTCCGGACCA 10552 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || |||||||| || || || ||||||| | ||| | | ||||| || Sbjct 10553 GCAGAGATTGATCTTTGCCGGGAAGCAGTTGGAAGATGGCAGAACTCTAGCTGATTATAA 10612 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| || ||||| || ||| | ||||| | || ||||| || Sbjct 10613 CATTCAAAAGGAGTCCACCCTTCATCTGGTGCTGCGTCTGAGAGGTGG 10660 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| ||||| || ||| | || || | || || ||| || Sbjct 10662 ATGCAGATATTTGTCAAGACATTGACAGGGAAAACTATTACTCTGGAGGTTGAGAGCTCA 10721 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || ||||| || ||| || || || |||||||| || || || Sbjct 10722 GATACCATAGATAATGTGAAGGCCAAGATCCAGGATAAGGAGGGGATTCCCCCGGATCAG 10781 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || || || || | || |||| || ||| ||| ||||||||| Sbjct 10782 CAGAGGCTCATCTTCGCTGGGAAGCAGCTCGAGGATGGACGTACTTTGGCTGATTACAAT 10841 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || |||||||| || || Sbjct 10842 ATTCAGAAGGAATCCACCCTCCA 10864 >seq72241 Length=55963 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || || ||| ||||||| | || ||||| ||| Sbjct 40402 ATGCAAATTTTTGTCAAAACTCTAACAGGCAAAACCATCACTCTTGAGGTGGAAAGTTCT 40343 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | ||| |||| | ||| || || ||||| ||||| ||||| || Sbjct 40342 GATACTATTGACAACGTTAAGGCAAAGATTCAA-GATAAGGAAGGAATTCCTCCTGATCA 40284 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| ||||| || || | ||||| | | | || | | |||||||| Sbjct 40283 GCAGCGCCTAATTTTCGCCGGGAAGCAGCTGGAAGACGGTAGAACCCTTGCGGATTACAA 40224 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || || || |||||| | || | ||||| |||| || Sbjct 40223 TATTCAGAAGGAGTCAACCCTACATCTTGTCTTGAGGCTTCGAGGGGG 40176 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || |||||| | || || | || || || ||| Sbjct 40174 ATGCAGATTTTTGTCAAGACCCTTACTGGTAAAACTATTACTCTTGAGGTTGAAAGTTCT 40115 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| |||| | ||||| | ||| || |||||||||||||| || || Sbjct 40114 GATACCATCGATAATGTCA---AGGCAAAGATTCAG-GATAAAGAAGGGATTCCTCCGGA 40059 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | || |||||||| || || || ||||| | ||| ||| | | ||||| Sbjct 40058 TCAACAAAGACTGATCTTTGCCGGGAAGCAGTTGGAAGACGGTCGTACTCTAGCTGATTA 39999 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || |||||||| || ||||| || ||| | ||| Sbjct 39998 TAACATTCAAAAGGAGTCCACTCTTCATCTGGTG 39965 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| ||||| || || | || || | || || ||| || Sbjct 39946 ATGCAGATATTTGTGAAGACATTGACTGGGAAGACGATTACGTTAGAGGTTGAGAGTTCA 39887 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| | || | ||| |||||||| || ||||| || || || Sbjct 39886 GATACCATAGATAATGTGAAGACCAAGATTCAG-GACAAAGAGGGAATTCCCCCGGATCA 39828 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| || || || || || | ||||||| || ||| ||| |||||||| Sbjct 39827 GCAGAGGCTTATATTCGCTGGAAAGCAGCTTGAAGATGGGCGTACTCTGGCTGATTACAA 39768 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||| || || || ||||| || || Sbjct 39767 TATCCAGAAGGAGTCCACCCTGCA 39744 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || ||| ||||||| || | || || | ||||| ||| || Sbjct 40630 ATGCAGATATTTGTTAAAACTCTGACCGGCAAGACGATTACTCTTGAAGTTGAGAGTTCC 40571 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| | || || | ||| || || || || ||||| || || Sbjct 40570 GATACAATTGACAACGTCA---AGGCCAAGATTCAG-GATAAGGAGGGAATTCCTCCGGA 40515 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| || |||| || ||||| || || || || || | | ||| | | |||||| Sbjct 40514 TCAGCAGAGGCTTATCTTCGCCGGGAAGCAGTTGGAGGACGGCAGGACTCTCGCCGATTA 40455 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||| ||||| ||||| || || ||| | || | ||||| Sbjct 40454 CAATATCCAAAAGGAATCTACTCTTCATCTCGTCTTGAGGCT 40413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432909191467130