Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq65811 134 1e-26
seq73807 114 1e-20
seq42370 111 1e-19
seq72241 107 2e-18
>seq65811
Length=66007
Score = 134 bits (148), Expect = 1e-26
Identities = 159/213 (75%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| |||||||| || ||||||| ||||||| ||| ||
Sbjct 55235 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACCATCACGCTCGAAGTTGAGAGCTCC 55176
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| | ||| | |||| ||| ||||| ||||| |||||||| |||||
Sbjct 55175 GACACCATCGACAACGTAAAGGCTAAAATTCAA-GACAAGGAAGGCATTCCACCAGACCA 55117
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| | | || || ||||| || || | || || | ||||| ||| ||| |||||
Sbjct 55116 GCAAAGATTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTACAA 55057
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||||| |||||||| || || || |||||
Sbjct 55056 TATTCAAAAGGAATCCACCCTTCACTTGGTGCT 55024
Score = 118 bits (130), Expect = 9e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| ||||| ||||||||||| | ||||| | || |||||| ||
Sbjct 54581 AATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACTATCACCCTGGAGGTGGAGAGCTC 54522
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||| || || ||||| ||||||| ||||| || || |||||||| |||||
Sbjct 54521 TGACACCATTGACAATGTGAAGGCAAAAATCCAAGACAAGGAGGGAATTCCACCAGACCA 54462
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || ||||| || || || | ||||||| | ||| ||| || |||||
Sbjct 54461 GCAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGAAGGACTTTGGCTGACTACAA 54402
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| || || || || || || ||| | || ||
Sbjct 54401 TATCCAGAAGGAGTCAACACTCCATCTTGTCCT 54369
>seq73807
Length=69832
Score = 114 bits (126), Expect = 1e-20
Identities = 160/222 (72%), Gaps = 8/222 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || || | || || ||||||| ||| |||
Sbjct 40066 ATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACAATAACTCTCGAAGTAGAGAGTTCT 40007
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|||||||| || |||| ||||||||| ||| ||||| ||||| ||||| |||||
Sbjct 40006 GACACTATTGATAATGTCA---AAGCAAAAATTCA-AGACAAGGAAGGAATTCCCCCTGA 39951
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||| | | || ||||| ||||||||| | || |||| ||| || | | |||||
Sbjct 39950 TCAGCAGAGATTGATCTTTGCTGGCAAACAACTGGAGGATGGTCGTACCCTTGCAGATTA 39891
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|| || ||||| || ||||| || ||| | || | |||||
Sbjct 39890 TAACATACAAAAGGAGTCCACCCTCCATCTTGTCTTGAGGCT 39849
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/206 (71%), Gaps = 6/206 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| |||| || || ||||||| | ||||| || ||
Sbjct 39610 ATGCAAATCTTCGTTAAGACCCTGACAGGAAAGACCATCACCCTGGAAGTCGAAAGCTCA 39551
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || || || |||| |||| ||| ||||| || || ||||| |||||
Sbjct 39550 GACACAATTGA--CAATGTCAAAGCCAAAATTCAG-GACAAGGAGGGAATTCCCCCTGAT 39494
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| || || | |||||||| || ||||| | || |||| || || | | || |||
Sbjct 39493 CAGCAACGTTTGATTTTTGCTGGGAAACAGCTTGAGGATGGCCGTACCCTTGCAGACTAC 39434
Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201
||||||||||| || ||||| || ||
Sbjct 39433 AATATTCAAAAGGAGTCCACCCTTCA 39408
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||| | || || || || | || | ||||| || |||
Sbjct 39154 ATGCAGATCTTTGTCAAGACTCTTACTGGGAAGACCGTTACCCTAGAAGTAGAAAGCTCT 39095
Query 25059 GACACTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || || || | || | | || || | ||| ||||||||||| ||||| |||||||
Sbjct 39094 GATACGATTGA-TAACGTTAAGGCTAAGATTCAA-GACAAAGAAGGCATTCCCCCTGACC 39037
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | || |||||||| ||||| | || |||| | | || | | ||||| |
Sbjct 39036 AGCAGCGTCTGATATTTGCCGGTAAACAGCTTGAGGATGGTAGGACACTTGCTGATTATA 38977
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTG 25208
| || ||||| || || || || ||||| |||
Sbjct 38976 ACATCCAAAAGGAGTCAACTCTGCATTTGGTG 38945
>seq42370
Length=41228
Score = 111 bits (122), Expect = 1e-19
Identities = 159/222 (72%), Gaps = 8/222 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || || | ||||| || | || || |||| || ||| ||
Sbjct 9978 ATGCAGATATTTGTTAAAACCCTAACCGGAAAGACGATTACTCTCGAGGTTGAGAGTTCC 10037
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|||||||| || |||| | || |||| ||| || || |||||||| || || ||
Sbjct 10038 GACACTATTGACAACGTCA---AGGCTAAAATTCAG-GATAAGGAAGGGATCCCTCCGGA 10093
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| || || | || ||||| || || ||||| || |||| || ||| | | ||||||
Sbjct 10094 CCAGCAAAGGCTCATCTTTGCTGGGAAGCAATTGGAGGATGGCCGGACTCTTGCCGATTA 10153
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
||||||||||||||| || || || ||| | || | |||||
Sbjct 10154 CAATATTCAAAAAGAGTCGACCCTTCATCTCGTCTTGAGGCT 10195
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || |||||| |||| || | || || || |||
Sbjct 10434 ATGCAGATTTTTGTTAAGACCCTCACTGGTAAAACCATTACTCTTGAGGTTGAAAGTTCT 10493
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || || | ||| |||| | ||| || || ||||||||||| || |||||
Sbjct 10494 GATACAATTGATAATGTTAAGGCAAAGATTCAG-GATAAGGAAGGGATTCCTCCGGACCA 10552
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | || |||||||| || || || ||||||| | ||| | | ||||| ||
Sbjct 10553 GCAGAGATTGATCTTTGCCGGGAAGCAGTTGGAAGATGGCAGAACTCTAGCTGATTATAA 10612
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||| || ||||| || ||| | ||||| | || ||||| ||
Sbjct 10613 CATTCAAAAGGAGTCCACCCTTCATCTGGTGCTGCGTCTGAGAGGTGG 10660
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| ||||| ||||| || ||| | || || | || || ||| ||
Sbjct 10662 ATGCAGATATTTGTCAAGACATTGACAGGGAAAACTATTACTCTGGAGGTTGAGAGCTCA 10721
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || || || ||||| || ||| || || || |||||||| || || ||
Sbjct 10722 GATACCATAGATAATGTGAAGGCCAAGATCCAGGATAAGGAGGGGATTCCCCCGGATCAG 10781
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || || || || || || | || |||| || ||| ||| |||||||||
Sbjct 10782 CAGAGGCTCATCTTCGCTGGGAAGCAGCTCGAGGATGGACGTACTTTGGCTGATTACAAT 10841
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
||||| || |||||||| || ||
Sbjct 10842 ATTCAGAAGGAATCCACCCTCCA 10864
>seq72241
Length=55963
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| || ||| | || || ||| ||||||| | || ||||| |||
Sbjct 40402 ATGCAAATTTTTGTCAAAACTCTAACAGGCAAAACCATCACTCTTGAGGTGGAAAGTTCT 40343
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| ||||| || | ||| |||| | ||| || || ||||| ||||| ||||| ||
Sbjct 40342 GATACTATTGACAACGTTAAGGCAAAGATTCAA-GATAAGGAAGGAATTCCTCCTGATCA 40284
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | ||||| ||||| || || | ||||| | | | || | | ||||||||
Sbjct 40283 GCAGCGCCTAATTTTCGCCGGGAAGCAGCTGGAAGACGGTAGAACCCTTGCGGATTACAA 40224
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||| || || || || |||||| | || | ||||| |||| ||
Sbjct 40223 TATTCAGAAGGAGTCAACCCTACATCTTGTCTTGAGGCTTCGAGGGGG 40176
Score = 100 bits (110), Expect = 2e-16
Identities = 152/214 (71%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || |||||| | || || | || || || |||
Sbjct 40174 ATGCAGATTTTTGTCAAGACCCTTACTGGTAAAACTATTACTCTTGAGGTTGAAAGTTCT 40115
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || ||||| |||| | ||||| | ||| || |||||||||||||| || ||
Sbjct 40114 GATACCATCGATAATGTCA---AGGCAAAGATTCAG-GATAAAGAAGGGATTCCTCCGGA 40059
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||||| | | || |||||||| || || || ||||| | ||| ||| | | |||||
Sbjct 40058 TCAACAAAGACTGATCTTTGCCGGGAAGCAGTTGGAAGACGGTCGTACTCTAGCTGATTA 39999
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208
|| |||||||| || ||||| || ||| | |||
Sbjct 39998 TAACATTCAAAAGGAGTCCACTCTTCATCTGGTG 39965
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| ||||| ||||| || || | || || | || || ||| ||
Sbjct 39946 ATGCAGATATTTGTGAAGACATTGACTGGGAAGACGATTACGTTAGAGGTTGAGAGTTCA 39887
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || || ||||| | || | ||| |||||||| || ||||| || || ||
Sbjct 39886 GATACCATAGATAATGTGAAGACCAAGATTCAG-GACAAAGAGGGAATTCCCCCGGATCA 39828
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || |||| || || || || || | ||||||| || ||| ||| ||||||||
Sbjct 39827 GCAGAGGCTTATATTCGCTGGAAAGCAGCTTGAAGATGGGCGTACTCTGGCTGATTACAA 39768
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
||| || || || ||||| || ||
Sbjct 39767 TATCCAGAAGGAGTCCACCCTGCA 39744
Score = 87.8 bits (96), Expect = 2e-12
Identities = 154/222 (69%), Gaps = 8/222 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || ||| ||||||| || | || || | ||||| ||| ||
Sbjct 40630 ATGCAGATATTTGTTAAAACTCTGACCGGCAAGACGATTACTCTTGAAGTTGAGAGTTCC 40571
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || |||| | || || | ||| || || || || ||||| || ||
Sbjct 40570 GATACAATTGACAACGTCA---AGGCCAAGATTCAG-GATAAGGAGGGAATTCCTCCGGA 40515
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||| || |||| || ||||| || || || || || | | ||| | | ||||||
Sbjct 40514 TCAGCAGAGGCTTATCTTCGCCGGGAAGCAGTTGGAGGACGGCAGGACTCTCGCCGATTA 40455
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|||||| ||||| ||||| || || ||| | || | |||||
Sbjct 40454 CAATATCCAAAAGGAATCTACTCTTCATCTCGTCTTGAGGCT 40413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 432909191467130
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