Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq35021 196 5e-45
seq39070 185 1e-41
seq71187 95.1 1e-14
seq60434 91.5 2e-13
seq79115 89.7 6e-13
seq66959 87.8 2e-12
seq32326 87.8 2e-12
seq57827 84.2 2e-11
seq78924 82.4 8e-11
seq56318 82.4 8e-11
>seq35021
Length=73443
Score = 196 bits (216), Expect = 5e-45
Identities = 583/887 (66%), Gaps = 23/887 (3%)
Strand=Plus/Plus
Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862
||||| ||||| || ||| | || || |||||||| ||||| || | |||| ||| |
Sbjct 65760 TTTTGATATTCTCCCACTCTCTTCTCGAAGAAATTCGTCTTCCCCTGCAAACTAATCAAT 65819
Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT----CAACTCGTA 92916
| || | | || ||||||| | ||||| |||| |||| ||| | |
Sbjct 65820 TCCATCCAATCGAATGGATTCAGAACATTATACATCTTT----CGATATCCCAAAGCTTC 65875
Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976
| ||||| || || || ||||| |||||||| ||| | ||| | ||||| || |
Sbjct 65876 AAGCAATCTGTCTGCAACGAATTCAATGTACTGGCTCATTAGATCTCCGTTCATACCAAC 65935
Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035
|| | ||| || ||||| ||| | ||| ||| ||||||| |||| || || |
Sbjct 65936 TAGG-GCACAAGGCAGAGCATCGCAGACGAATTCTCTCTCGATATCAACTGCATCCGCTA 65994
Query 93036 AGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACG-ACATAATTGTACATTAAGCAC 93094
|||| | | | ||| | | || ||| | || | | | |||| | ||||||
Sbjct 65995 CGATTCCCCTGATTCTT-TCCTCGGAAAGTTTCATCCGCAGAAGACTGTAGAGTAAGCAA 66053
Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCT 93154
|| || ||| || | |||||||||||| || || ||||| || ||| |||| ||
Sbjct 66054 GCGAAATCGCAGTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGTCCG 66113
Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214
|| | || || |||||||| | ||||||||| | |||||| || || ||||||||
Sbjct 66114 GGCATAAGGCCACGTTTCTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAAAATATT 66173
Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATC 93274
||||| || || || || || |||||||||||||| | | || | | ||||
Sbjct 66174 CCTTCGACACAAGCGAAGGCGACTATACGTTCGGCAAAGGATTCCGA---GCCGTCGATC 66230
Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT 93334
|| | ||||| | ||| || || | || ||||| | ||||||||| ||| |||
Sbjct 66231 CAACGAAGTGCCCATTTGGCCTTCTTTTCAACGCAAGGAATTGTTTCGATTGCGCGAAAG 66290
Query 93335 AG-GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393
|| | ||| ||| | || || |||||| | |||| || ||| |||||| ||
Sbjct 66291 AGTCTGTTCT-TCTCATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATACATCTC 66349
Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453
|| || | |||||| || || |||||||| ||||| || | ||||| | |||||
Sbjct 66350 GGAGTGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAAATCTG 66409
Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513
||||||| |||| | ||||||| || || || ||||| || || || ||
Sbjct 66410 AACTTCTTTCATGAATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAGCGGCGAA 66469
Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CG 93571
|| || | | || | || || || ||| || | || ||||| | ||
Sbjct 66470 GAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCCATTGACG 66529
Query 93572 GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTG 93631
| || || | || |||||||| || ||| | ||||| || || || ||||| || |||
Sbjct 66530 G--AGGTCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCTTCTTG 66587
Query 93632 TACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678
||||| ||||| || | | ||||||||||| || ||| |||||
Sbjct 66588 TACATCTCCCAAATCTGAGGGTATTGAATTGGGAACATGCAGAAACG 66634
>seq39070
Length=11651
Score = 185 bits (204), Expect = 1e-41
Identities = 571/873 (65%), Gaps = 13/873 (1%)
Strand=Plus/Minus
Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862
||||| ||||| ||||| | || ||||||||||| ||||| || | |||| ||| |
Sbjct 8225 TTTTGATATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAAACTAATCAAC 8166
Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATC--AACTCGTACA 92918
| || | | || || |||| | | ||| | ||||| | ||| || | ||
Sbjct 8165 TCCATCCAATCGAACGGGTTCTGAACATCATAC-ATTTTTC-CATATCCCAAAGCTCCCA 8108
Query 92919 ATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAA 92978
||||| || || |||||||| |||||||| ||| | || | ||||| || | |
Sbjct 8107 GCAATCTGTCTGCAACAAATTCAATGTACTGGCTCATTAGGTCTCCGTTCATCCCCACCA 8048
Query 92979 GACGTACAGG-TAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037
| | ||||| ||| ||||| || ||| || ||||| || | || || || | |
Sbjct 8047 GT-GCACAGGGTAGGGCGTCACACACGAACTCCTTCTCAATATCCACTGCATCAGCAACG 7989
Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATA-ATTGTACATTAAGCACGC 93096
||| | | | ||| | | | | |||| || | | |||| | |||||| ||
Sbjct 7988 ATTCCCCTGATTCTT-TCCTCGCTCAGCTTTGACCGCAGCAGACTGTAGAGTAAGCAGGC 7930
Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156
|||||| ||| | ||||| ||||| || || ||||| || ||| ||||| || ||
Sbjct 7929 AAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTTAATCCGGG 7870
Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216
| || || |||||||| ||||||||||| | | |||||| || || |||||||| ||
Sbjct 7869 CATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATTCC 7810
Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276
|| || ||||| || || | ||| || ||||| | | || | ||||||
Sbjct 7809 CTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGA---GCCATCGATCCA 7753
Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336
| ||||||| ||| || || | || |||||| | || || || || ||| ||
Sbjct 7752 ACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACGAAAGAG 7693
Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396
|| |||||| ||||| |||||| | |||| || ||| |||||| || ||
Sbjct 7692 CCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCAATAGACTATACATCTCGGA 7633
Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456
|| | |||||| || |||||||| || ||||| || | || || | || || ||
Sbjct 7632 GTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGAAATTTGAAC 7573
Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516
||||| |||| | | ||||| || || |||||||| || || ||||||||
Sbjct 7572 TTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAGCGGCAAAAAA 7513
Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576
|| | | || | || || || ||| || | || ||||| | | ||
Sbjct 7512 GGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTTCCCATTGGCGGAG 7453
Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636
|| | || ||||||||||| ||| | ||||| || || || || || || ||||||||
Sbjct 7452 GTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 7393
Query 93637 ATCCCATATGTCTTGATATTGAATTGGAAATAT 93669
||||| || | | ||||||||||| || ||
Sbjct 7392 TTCCCAAATCTGAGGGTATTGAATTGGGAACAT 7360
>seq71187
Length=76992
Score = 95.1 bits (104), Expect = 1e-14
Identities = 80/97 (82%), Gaps = 1/97 (1%)
Strand=Plus/Minus
Query 126259 ATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTCG 126317
||| | ||||||| ||||||||||||||||||||||||| | ||| |||||| | | ||
Sbjct 27540 ATTCAAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCAGCG 27481
Query 126318 GGAGCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354
| |||||||||| || ||||| ||||||||| |||
Sbjct 27480 AGGGCGTGGGTTCAAATCCCACTTCTGACAAATGATT 27444
>seq60434
Length=17470
Score = 91.5 bits (100), Expect = 2e-13
Identities = 77/94 (82%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||| | || || | |||
Sbjct 4175 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 4234
Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
||||||| || ||||| ||||||| || || ||
Sbjct 4235 TGGGTTCAAATCCCACTTCTGACAATTTTTTTTT 4268
>seq79115
Length=36970
Score = 89.7 bits (98), Expect = 6e-13
Identities = 78/95 (82%), Gaps = 4/95 (4%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 7791 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 7850
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||||| || ||||| ||||| |||||| ||
Sbjct 7851 GTGGGTTCAAATCCCACTTCTGAC--ATTATTTTT 7883
>seq66959
Length=24069
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/85 (84%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 23341 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 23282
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
|||||||| || ||||| ||||||
Sbjct 23281 GTGGGTTCAAATCCCACTTCTGACA 23257
>seq32326
Length=18191
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/85 (84%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 16191 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 16250
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
|||||||| || ||||| ||||||
Sbjct 16251 GTGGGTTCAAATCCCACTTCTGACA 16275
>seq57827
Length=18673
Score = 84.2 bits (92), Expect = 2e-11
Identities = 69/83 (83%), Gaps = 2/83 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 14556 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 14613
Query 126328 TTCGAACCCCACACCTGACAAAT 126350
||| || |||||| ||| |||||
Sbjct 14614 TTCAAATCCCACAGCTGTCAAAT 14636
>seq78924
Length=113106
Score = 82.4 bits (90), Expect = 8e-11
Identities = 72/89 (81%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGG 126319
||| |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | |
Sbjct 82615 TACTGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAG 82674
Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAA 126348
|||||||||| || ||||| |||||||
Sbjct 82675 GGCGTGGGTTCAAATCCCACTTCTGACAA 82703
>seq56318
Length=47635
Score = 82.4 bits (90), Expect = 8e-11
Identities = 69/84 (82%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 43902 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 43959
Query 126325 GGGTTCGAACCCCACACCTGACAA 126348
|||||| || |||||| ||| |||
Sbjct 43960 GGGTTCAAATCCCACAGCTGTCAA 43983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556308797810480
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