Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq35021 196 5e-45 seq39070 185 1e-41 seq71187 95.1 1e-14 seq60434 91.5 2e-13 seq79115 89.7 6e-13 seq66959 87.8 2e-12 seq32326 87.8 2e-12 seq57827 84.2 2e-11 seq78924 82.4 8e-11 seq56318 82.4 8e-11 >seq35021 Length=73443 Score = 196 bits (216), Expect = 5e-45 Identities = 583/887 (66%), Gaps = 23/887 (3%) Strand=Plus/Plus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 ||||| ||||| || ||| | || || |||||||| ||||| || | |||| ||| | Sbjct 65760 TTTTGATATTCTCCCACTCTCTTCTCGAAGAAATTCGTCTTCCCCTGCAAACTAATCAAT 65819 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT----CAACTCGTA 92916 | || | | || ||||||| | ||||| |||| |||| ||| | | Sbjct 65820 TCCATCCAATCGAATGGATTCAGAACATTATACATCTTT----CGATATCCCAAAGCTTC 65875 Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 | ||||| || || || ||||| |||||||| ||| | ||| | ||||| || | Sbjct 65876 AAGCAATCTGTCTGCAACGAATTCAATGTACTGGCTCATTAGATCTCCGTTCATACCAAC 65935 Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 || | ||| || ||||| ||| | ||| ||| ||||||| |||| || || | Sbjct 65936 TAGG-GCACAAGGCAGAGCATCGCAGACGAATTCTCTCTCGATATCAACTGCATCCGCTA 65994 Query 93036 AGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACG-ACATAATTGTACATTAAGCAC 93094 |||| | | | ||| | | || ||| | || | | | |||| | |||||| Sbjct 65995 CGATTCCCCTGATTCTT-TCCTCGGAAAGTTTCATCCGCAGAAGACTGTAGAGTAAGCAA 66053 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCT 93154 || || ||| || | |||||||||||| || || ||||| || ||| |||| || Sbjct 66054 GCGAAATCGCAGTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGTCCG 66113 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214 || | || || |||||||| | ||||||||| | |||||| || || |||||||| Sbjct 66114 GGCATAAGGCCACGTTTCTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAAAATATT 66173 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATC 93274 ||||| || || || || || |||||||||||||| | | || | | |||| Sbjct 66174 CCTTCGACACAAGCGAAGGCGACTATACGTTCGGCAAAGGATTCCGA---GCCGTCGATC 66230 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT 93334 || | ||||| | ||| || || | || ||||| | ||||||||| ||| ||| Sbjct 66231 CAACGAAGTGCCCATTTGGCCTTCTTTTCAACGCAAGGAATTGTTTCGATTGCGCGAAAG 66290 Query 93335 AG-GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 || | ||| ||| | || || |||||| | |||| || ||| |||||| || Sbjct 66291 AGTCTGTTCT-TCTCATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATACATCTC 66349 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 || || | |||||| || || |||||||| ||||| || | ||||| | ||||| Sbjct 66350 GGAGTGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAAATCTG 66409 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 ||||||| |||| | ||||||| || || || ||||| || || || || Sbjct 66410 AACTTCTTTCATGAATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAGCGGCGAA 66469 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CG 93571 || || | | || | || || || ||| || | || ||||| | || Sbjct 66470 GAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCCATTGACG 66529 Query 93572 GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTG 93631 | || || | || |||||||| || ||| | ||||| || || || ||||| || ||| Sbjct 66530 G--AGGTCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCTTCTTG 66587 Query 93632 TACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 ||||| ||||| || | | ||||||||||| || ||| ||||| Sbjct 66588 TACATCTCCCAAATCTGAGGGTATTGAATTGGGAACATGCAGAAACG 66634 >seq39070 Length=11651 Score = 185 bits (204), Expect = 1e-41 Identities = 571/873 (65%), Gaps = 13/873 (1%) Strand=Plus/Minus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 ||||| ||||| ||||| | || ||||||||||| ||||| || | |||| ||| | Sbjct 8225 TTTTGATATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAAACTAATCAAC 8166 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATC--AACTCGTACA 92918 | || | | || || |||| | | ||| | ||||| | ||| || | || Sbjct 8165 TCCATCCAATCGAACGGGTTCTGAACATCATAC-ATTTTTC-CATATCCCAAAGCTCCCA 8108 Query 92919 ATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAA 92978 ||||| || || |||||||| |||||||| ||| | || | ||||| || | | Sbjct 8107 GCAATCTGTCTGCAACAAATTCAATGTACTGGCTCATTAGGTCTCCGTTCATCCCCACCA 8048 Query 92979 GACGTACAGG-TAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 | | ||||| ||| ||||| || ||| || ||||| || | || || || | | Sbjct 8047 GT-GCACAGGGTAGGGCGTCACACACGAACTCCTTCTCAATATCCACTGCATCAGCAACG 7989 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATA-ATTGTACATTAAGCACGC 93096 ||| | | | ||| | | | | |||| || | | |||| | |||||| || Sbjct 7988 ATTCCCCTGATTCTT-TCCTCGCTCAGCTTTGACCGCAGCAGACTGTAGAGTAAGCAGGC 7930 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 |||||| ||| | ||||| ||||| || || ||||| || ||| ||||| || || Sbjct 7929 AAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTTAATCCGGG 7870 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | || || |||||||| ||||||||||| | | |||||| || || |||||||| || Sbjct 7869 CATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATTCC 7810 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 || || ||||| || || | ||| || ||||| | | || | |||||| Sbjct 7809 CTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGA---GCCATCGATCCA 7753 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 | ||||||| ||| || || | || |||||| | || || || || ||| || Sbjct 7752 ACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACGAAAGAG 7693 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 || |||||| ||||| |||||| | |||| || ||| |||||| || || Sbjct 7692 CCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCAATAGACTATACATCTCGGA 7633 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 || | |||||| || |||||||| || ||||| || | || || | || || || Sbjct 7632 GTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGAAATTTGAAC 7573 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 ||||| |||| | | ||||| || || |||||||| || || |||||||| Sbjct 7572 TTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAGCGGCAAAAAA 7513 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576 || | | || | || || || ||| || | || ||||| | | || Sbjct 7512 GGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTTCCCATTGGCGGAG 7453 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 || | || ||||||||||| ||| | ||||| || || || || || || |||||||| Sbjct 7452 GTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 7393 Query 93637 ATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 ||||| || | | ||||||||||| || || Sbjct 7392 TTCCCAAATCTGAGGGTATTGAATTGGGAACAT 7360 >seq71187 Length=76992 Score = 95.1 bits (104), Expect = 1e-14 Identities = 80/97 (82%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 126259 ATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTCG 126317 ||| | ||||||| ||||||||||||||||||||||||| | ||| |||||| | | || Sbjct 27540 ATTCAAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCAGCG 27481 Query 126318 GGAGCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 | |||||||||| || ||||| ||||||||| ||| Sbjct 27480 AGGGCGTGGGTTCAAATCCCACTTCTGACAAATGATT 27444 >seq60434 Length=17470 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 4175 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 4234 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| || ||||| ||||||| || || || Sbjct 4235 TGGGTTCAAATCCCACTTCTGACAATTTTTTTTT 4268 >seq79115 Length=36970 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/95 (82%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 7791 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 7850 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| ||||| |||||| || Sbjct 7851 GTGGGTTCAAATCCCACTTCTGAC--ATTATTTTT 7883 >seq66959 Length=24069 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 23341 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 23282 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 23281 GTGGGTTCAAATCCCACTTCTGACA 23257 >seq32326 Length=18191 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 16191 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 16250 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 16251 GTGGGTTCAAATCCCACTTCTGACA 16275 >seq57827 Length=18673 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 14556 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 14613 Query 126328 TTCGAACCCCACACCTGACAAAT 126350 ||| || |||||| ||| ||||| Sbjct 14614 TTCAAATCCCACAGCTGTCAAAT 14636 >seq78924 Length=113106 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGG 126319 ||| |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | Sbjct 82615 TACTGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAG 82674 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 82675 GGCGTGGGTTCAAATCCCACTTCTGACAA 82703 >seq56318 Length=47635 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 43902 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 43959 Query 126325 GGGTTCGAACCCCACACCTGACAA 126348 |||||| || |||||| ||| ||| Sbjct 43960 GGGTTCAAATCCCACAGCTGTCAA 43983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556308797810480