Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq61065 131 3e-25
seq70882 95.1 2e-14
seq66727 93.3 9e-14
seq59247 93.3 9e-14
seq33477 93.3 9e-14
seq79026 91.5 3e-13
seq77370 91.5 3e-13
seq74941 91.5 3e-13
seq78575 87.8 4e-12
seq73943 87.8 4e-12
seq40213 87.8 4e-12
seq24804 87.8 4e-12
>seq61065
Length=19622
Score = 131 bits (144), Expect = 3e-25
Identities = 170/232 (73%), Gaps = 5/232 (2%)
Strand=Plus/Plus
Query 218574 TCCCAGCG-TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCG--CATT 218630
||||| || |||| |||||||| |||||| || | ||||| ||||| | | | ||
Sbjct 5710 TCCCATCGATGGTTGATGGCCTGAAGCCAGGTCAAAGAAAGAT--TCTTTTCTGTTCTTT 5767
Query 218631 CAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAAT 218690
|||| | ||| | || | ||| ||||| |||||||| ||||||||||| || ||
Sbjct 5768 CAAGAGAAACTTTGTCAAGGAAGCAAAGGTAGCTCAGTTCTCTGGTTATGTCTCAGAGCA 5827
Query 218691 TTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750
|||| |||||||| ||||| |||||||| || | || | || ||||| |||||
Sbjct 5828 CTCTGCTTACCATCATGGTGAACAGAGTCTTGCCAGTACAATAATCGGTATGGCTCAGGA 5887
Query 218751 CTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802
| ||||||||||||||| || || | || | ||||| ||||||||||||
Sbjct 5888 TTTTGTGGGCAGTAACAATATCAATCTTCTTCAACCCAATGGTCAGTTTGGT 5939
>seq70882
Length=145281
Score = 95.1 bits (104), Expect = 2e-14
Identities = 61/67 (91%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||
Sbjct 109154 TAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 109095
Query 142562 GCCCCAC 142568
|||||||
Sbjct 109094 GCCCCAC 109088
>seq66727
Length=61197
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 48729 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 48788
Query 142563 CCCCAC 142568
||||||
Sbjct 48789 CCCCAC 48794
>seq59247
Length=39225
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 31126 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 31185
Query 142563 CCCCAC 142568
||||||
Sbjct 31186 CCCCAC 31191
>seq33477
Length=49680
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 13437 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 13378
Query 142563 CCCCAC 142568
||||||
Sbjct 13377 CCCCAC 13372
>seq79026
Length=34473
Score = 91.5 bits (100), Expect = 3e-13
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||||
Sbjct 5902 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5843
Query 142564 CCCAC 142568
|||||
Sbjct 5842 CCCAC 5838
>seq77370
Length=32316
Score = 91.5 bits (100), Expect = 3e-13
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||||
Sbjct 19065 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 19006
Query 142564 CCCAC 142568
|||||
Sbjct 19005 CCCAC 19001
>seq74941
Length=86249
Score = 91.5 bits (100), Expect = 3e-13
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||||
Sbjct 17096 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17037
Query 142564 CCCAC 142568
|||||
Sbjct 17036 CCCAC 17032
>seq78575
Length=21665
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 14794 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 14853
Query 142563 CCCCAC 142568
||||||
Sbjct 14854 CCCCAC 14859
>seq73943
Length=20406
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 3005 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3064
Query 142563 CCCCAC 142568
||||||
Sbjct 3065 CCCCAC 3070
>seq40213
Length=25986
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||
Sbjct 12303 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 12362
Query 142563 CCCCAC 142568
||||||
Sbjct 12363 CCCCAC 12368
>seq24804
Length=40873
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 11671 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 11730
Query 142563 CCCCAC 142568
||||||
Sbjct 11731 CCCCAC 11736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1026792459352982
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |