Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq65811 86.0 4e-12 >seq65811 Length=66007 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || || || || || || || ||| |||| ||| | | Sbjct 54581 AATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACTATCACCCTGGAGGTGGAGAGCTC 54522 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| |||||| || || ||||| | || | |||| Sbjct 54521 TGACACCATTGACAATGTGAAGGCAAAAATCCAAGACAAGGAGGGAATTCCACCAGACCA 54462 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | ||||||||||| || || || |||||| || ||| |||| || ||||| Sbjct 54461 GCAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGAAGGACTTTGGCTGACTACAA 54402 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGAT 22062 ||| |||||||| || || || ||| | || | ||| | || || |||| Sbjct 54401 TATCCAGAAGGAGTCAACACTCCATCTTGTCCTCCGTCTCCGTGGTGGAT 54352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357778674842908