Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq39070 111 3e-19
>seq39070
Length=11651
Score = 111 bits (122), Expect = 3e-19
Identities = 452/702 (64%), Gaps = 14/702 (2%)
Strand=Plus/Plus
Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368
|||||||||||||| || ||| |||||| |||||||| | || || | |||||
Sbjct 7393 ATGTACAAGAAGGCCGAGGCCTCTTTCTGGACAGCCGAGGAAGTCGATCTCTCTCAGGAC 7452
Query 42369 A-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGC 42427
| ||| ||||| | || || |||| ||| ||| || | || ||
Sbjct 7453 CTCCGCCAA-TGGGAAGCCCTAACTCCCGACGAGCGTCACTTCATCACTCACGTTCTCGC 7511
Query 42428 CTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGA 42487
||| || ||||| ||||| || || || ||||| || ||| | | |||||||||||
Sbjct 7512 CTTTTTTGCCGCTTCTGATGGTATTGTTTTGGAGAATCTTGCCGGCCGATTCATGAAAGA 7571
Query 42488 GGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545
|| || | ||| ||||| || ||| |||||||| || || || || ||||| |
Sbjct 7572 AGTTCA--AATTTCAGAGGCCCGTGCCTTTTACGGCTTTCAAATTGCTATCGAGAATATT 7629
Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAAC 42605
||||| ||| |||| | ||||| | | ||||| |||| | | |||| |
Sbjct 7630 CACTCCGAGATGTATAGTCTATTGCTCGAGTCCTACATAAAGGATTCAGACGAGAAGCAT 7689
Query 42606 GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTC 42665
|||| || || || ||||| || || || | | |||||||| | ||||| ||
Sbjct 7690 AGGCTCTTTCGTGCGATTGAGACCATTCCTTGTGTTGAAAAGAAGGCCAATTGGGCACTT 7749
Query 42666 AACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725
|||||||| | | || | | | || | ||| | | || |||||| | ||
Sbjct 7750 CGTTGGATCGA-TGGCTCG--GAATCCTTTGCTGAGCGTGTCGTCGCCTTTGCTTGTGTT 7806
Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCG 42785
||||| || || |||||||| || | || || ||||| ||| | || |
Sbjct 7807 GAGGGAATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGCTAAAGAAACGGGGGCTT 7866
Query 42786 ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGAC 42845
||||||||| | |||||||||||||| | || | || || || || ||| | |||
Sbjct 7867 ATGCCCGGATTAACCTTCTCGAACGAGTTAATTTCTCGAGATGAAGGCCTCCATTGTGAC 7926
Query 42846 TTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGG 42905
||||||||| | | ||| || | || || |||| |||| | || ||
Sbjct 7927 TTTGCCTGCTTAC---TCTACAGTCTGCTGCGGTCAAAGCTGAGCGAGGAAAGAATCAGG 7983
Query 42906 GCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC-GT 42964
| ||| | | || || ||||| || |||||||||||| | | | || ||| ||
Sbjct 7984 GGAATCGTTGCTGATGCAGTGGATATTGAGAAGGAGTTCGTGTGTGACGCCCTACCCTGT 8043
Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006
| | ||||| || |||||| ||||| ||| || |||||||
Sbjct 8044 G-CACTGGTGGGGATGAACGGAGACCTAATGAGCCAGTACAT 8084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943403100159520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |