Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq39070 111 3e-19 >seq39070 Length=11651 Score = 111 bits (122), Expect = 3e-19 Identities = 452/702 (64%), Gaps = 14/702 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| |||||||| | || || | ||||| Sbjct 7393 ATGTACAAGAAGGCCGAGGCCTCTTTCTGGACAGCCGAGGAAGTCGATCTCTCTCAGGAC 7452 Query 42369 A-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGC 42427 | ||| ||||| | || || |||| ||| ||| || | || || Sbjct 7453 CTCCGCCAA-TGGGAAGCCCTAACTCCCGACGAGCGTCACTTCATCACTCACGTTCTCGC 7511 Query 42428 CTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGA 42487 ||| || ||||| ||||| || || || ||||| || ||| | | ||||||||||| Sbjct 7512 CTTTTTTGCCGCTTCTGATGGTATTGTTTTGGAGAATCTTGCCGGCCGATTCATGAAAGA 7571 Query 42488 GGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 || || | ||| ||||| || ||| |||||||| || || || || ||||| | Sbjct 7572 AGTTCA--AATTTCAGAGGCCCGTGCCTTTTACGGCTTTCAAATTGCTATCGAGAATATT 7629 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 ||||| ||| |||| | ||||| | | ||||| |||| | | |||| | Sbjct 7630 CACTCCGAGATGTATAGTCTATTGCTCGAGTCCTACATAAAGGATTCAGACGAGAAGCAT 7689 Query 42606 GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTC 42665 |||| || || || ||||| || || || | | |||||||| | ||||| || Sbjct 7690 AGGCTCTTTCGTGCGATTGAGACCATTCCTTGTGTTGAAAAGAAGGCCAATTGGGCACTT 7749 Query 42666 AACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 |||||||| | | || | | | || | ||| | | || |||||| | || Sbjct 7750 CGTTGGATCGA-TGGCTCG--GAATCCTTTGCTGAGCGTGTCGTCGCCTTTGCTTGTGTT 7806 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCG 42785 ||||| || || |||||||| || | || || ||||| ||| | || | Sbjct 7807 GAGGGAATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGCTAAAGAAACGGGGGCTT 7866 Query 42786 ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGAC 42845 ||||||||| | |||||||||||||| | || | || || || || ||| | ||| Sbjct 7867 ATGCCCGGATTAACCTTCTCGAACGAGTTAATTTCTCGAGATGAAGGCCTCCATTGTGAC 7926 Query 42846 TTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGG 42905 ||||||||| | | ||| || | || || |||| |||| | || || Sbjct 7927 TTTGCCTGCTTAC---TCTACAGTCTGCTGCGGTCAAAGCTGAGCGAGGAAAGAATCAGG 7983 Query 42906 GCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC-GT 42964 | ||| | | || || ||||| || |||||||||||| | | | || ||| || Sbjct 7984 GGAATCGTTGCTGATGCAGTGGATATTGAGAAGGAGTTCGTGTGTGACGCCCTACCCTGT 8043 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006 | | ||||| || |||||| ||||| ||| || ||||||| Sbjct 8044 G-CACTGGTGGGGATGAACGGAGACCTAATGAGCCAGTACAT 8084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943403100159520