Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq42370 100 2e-16 seq72241 91.5 1e-13 >seq42370 Length=41228 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || || ||||| || || ||||||||| ||||||||||| ||||| || Sbjct 10423 AGCCTCAAGACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAAGGTTCTA 10364 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||| ||||| |||||||| |||||||||||||||||| || | | ||| Sbjct 10363 CCATCCTCCAACTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGAATCCCCTCC 10304 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 || || ||| || ||||| | | | |||||| | ||| || | || Sbjct 10303 TTATCTTGAATCTTCGCCTTAACGTTATCAATTGTATCAGAACTCTCGACCTCCAAGGTA 10244 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || ||||| |||||||||||||| Sbjct 10243 ATCGTCTTACCAGTCAGAGTTTTAACAAAGATTTGCAT 10206 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||||||| ||||||||||||||||| ||| |||||| |||||||| ||||| || Sbjct 10661 ACCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGC 10602 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || | || ||||| ||||| |||||||| |||| | |||||| ||| || Sbjct 10601 TAGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGG 10542 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | || || ||| ||| ||| ||||| | | |||||| | ||| Sbjct 10541 AATCCCTTCCTTATCCTGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTCAAC 10482 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || ||||| || || || || || ||||| || ||||| Sbjct 10481 CTCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || |||||||| || |||||||| ||||| ||||| || | ||| Sbjct 9967 AGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGTATGTTATAATCGGCTAGGGTTCGG 9908 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||||||| |||||||| || || ||||||||||||||| || | | ||| Sbjct 9907 CCGTCCTCCAATTGTTTGCCGGCGAAGATAAGGCGCTGCTGATCCGGAGGGATACCCTCC 9848 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 || || || || ||| | | | | |||| | | || |||| ||| Sbjct 9847 TTATCTTGGATCTTAGCCTTGACATTATCAATAGTATCGGAACTCTCAACCTCGAGAGTT 9788 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAA 34133 || || || || ||||| |||||||| ||||| |||||| |||| Sbjct 9787 ATGGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCATTCTTAA 9744 >seq72241 Length=55963 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || ||||| |||| |||||||||||| ||| |||||| |||||||| ||||| || Sbjct 39947 ACCACCCCTCAGACGCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGC 40006 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| ||||| ||||| |||||||| ||||| | || |||||| || Sbjct 40007 TAGAGTACGACCGTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGG 40066 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | ||||| ||| ||| ||| ||| | | | |||||| | ||| Sbjct 40067 AATCCCTTCTTTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCAAC 40126 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || ||||| || || || || || ||||| || ||||| Sbjct 40127 CTCAAGAGTAATAGTTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396678641920204