Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq42370 100 2e-16
seq72241 91.5 1e-13
>seq42370
Length=41228
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|||| || || ||||| || || ||||||||| ||||||||||| ||||| ||
Sbjct 10423 AGCCTCAAGACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAAGGTTCTA 10364
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
| || ||||| ||||| |||||||| |||||||||||||||||| || | | |||
Sbjct 10363 CCATCCTCCAACTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGAATCCCCTCC 10304
Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089
|| || ||| || ||||| | | | |||||| | ||| || | ||
Sbjct 10303 TTATCTTGAATCTTCGCCTTAACGTTATCAATTGTATCAGAACTCTCGACCTCCAAGGTA 10244
Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| || || || || || ||||| ||||||||||||||
Sbjct 10243 ATCGTCTTACCAGTCAGAGTTTTAACAAAGATTTGCAT 10206
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| |||||||| ||||||||||||||||| ||| |||||| |||||||| ||||| ||
Sbjct 10661 ACCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGC 10602
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| || | || ||||| ||||| |||||||| |||| | |||||| ||| ||
Sbjct 10601 TAGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGG 10542
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079
| | || || ||| ||| ||| ||||| | | |||||| | |||
Sbjct 10541 AATCCCTTCCTTATCCTGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTCAAC 10482
Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| | || || ||||| || || || || || ||||| || |||||
Sbjct 10481 CTCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434
Score = 89.7 bits (98), Expect = 4e-13
Identities = 154/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|| || || || |||||||| || |||||||| ||||| ||||| || | |||
Sbjct 9967 AGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGTATGTTATAATCGGCTAGGGTTCGG 9908
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
|||| |||||||| |||||||| || || ||||||||||||||| || | | |||
Sbjct 9907 CCGTCCTCCAATTGTTTGCCGGCGAAGATAAGGCGCTGCTGATCCGGAGGGATACCCTCC 9848
Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089
|| || || || ||| | | | | |||| | | || |||| |||
Sbjct 9847 TTATCTTGGATCTTAGCCTTGACATTATCAATAGTATCGGAACTCTCAACCTCGAGAGTT 9788
Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAA 34133
|| || || || ||||| |||||||| ||||| |||||| ||||
Sbjct 9787 ATGGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCATTCTTAA 9744
>seq72241
Length=55963
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || ||||| |||| |||||||||||| ||| |||||| |||||||| ||||| ||
Sbjct 39947 ACCACCCCTCAGACGCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGC 40006
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| || |||| ||||| ||||| |||||||| ||||| | || |||||| ||
Sbjct 40007 TAGAGTACGACCGTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGG 40066
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079
| | ||||| ||| ||| ||| ||| | | | |||||| | |||
Sbjct 40067 AATCCCTTCTTTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCAAC 40126
Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| | || || ||||| || || || || || ||||| || |||||
Sbjct 40127 CTCAAGAGTAATAGTTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396678641920204
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |