Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq72241 141 2e-28 seq73807 134 3e-26 seq42370 129 1e-24 seq65811 118 2e-21 seq65142 107 5e-18 >seq72241 Length=55963 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| || | |||||||||| || ||| ||||||||||| || |||||| Sbjct 40404 CCCCCACGGAGCCTCAAGACGAGATGAAGAGTAGATTCCTTTTGGATATTGTAATCGGCG 40463 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||||| || || || || || |||||||| || | ||| ||| || Sbjct 40464 AGAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 40523 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 ||||| || |||||||| || || || || ||||| || || | |||| ||| || Sbjct 40524 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTC---TCA 40580 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || |||||||| ||||||||||| || || ||||||||||| Sbjct 40581 ACTTCAAGAGTAATCGTCTTGCCGGTCAGAGTTTTAACAAATATCTGCAT 40630 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||||||||| || || ||||| | || || || ||||||||||| |||||| Sbjct 40632 CCACCGCGGAGTCTGAGGACAAGATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCG 40691 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | |||||| || |||||||| || ||||| ||| ||| Sbjct 40692 AGGGTTCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGAGGG 40751 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 ||||| || || || || || || || || || || || || | ||| |||| || Sbjct 40752 ATTCCCTCCTTGTCTTGAATCTTAGCCTTGACATTGTCGATTGTATCGGAGCTC---TCG 40808 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| ||||| || || || ||||| |||||||| Sbjct 40809 ACCTCAAGGGTAATTGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCAT 40858 Score = 104 bits (114), Expect = 6e-17 Identities = 164/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || || || | ||| || || |||||||| || || || Sbjct 39720 CCGCCTCGGAGGCGGAGGACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAATCAGCC 39779 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | || ||||| ||||| || || | ||| ||| || ||| Sbjct 39780 AGAGTACGCCCATCTTCAAGCTGCTTTCCAGCGAATATAAGCCTCTGCTGA---TCCGGG 39836 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| ||||| || || | ||||| || ||||| | ||| | | ||| Sbjct 39837 GGAATTCCCTCTTTGTCCTGAATCTTGGTCTTCACATTATCTATGGTATC--TGAACTCT 39894 Query 288424 --ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||| ||||||||||| |||| ||||| || ||||||||||| Sbjct 39895 CAACCTCTAACGTAATCGTCTTCCCAGTCAATGTCTTCACAAATATCTGCAT 39946 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || ||||||| ||| || ||||| || ||||| || || || || || |||||||| Sbjct 39966 ACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGCTAGAGTACGACCGTCTTCC 40025 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 || || || || || |||||||| | |||||| || || |||||||||||||| Sbjct 40026 AACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGGAATCCCTTCTTTATCCTGA 40085 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || || || || || || || | ||| ||| || || || || || || || Sbjct 40086 ATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCAACCTCAAGAGTAATAGTTTTA 40145 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||| || |||||||| Sbjct 40146 CCAGTAAGGGTCTTGACAAAAATCTGCAT 40174 >seq73807 Length=69832 Score = 134 bits (148), Expect = 3e-26 Identities = 171/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| | || || |||| ||| || ||||||||||| ||||| || Sbjct 39156 CCACCACGGAGTCTCAAGACAAGGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCTGCC 39215 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | |||||| ||||| || |||| || || || |||||| Sbjct 39216 AGGGTACGGCCATCCTCAAGTTGTTTCCCTGCAAAAATCAAGCGTTGCTG---GTCTGGG 39272 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||||| || || ||||| ||||| ||||| ||||| || || | || ||| | Sbjct 39273 GGAATTCCCTCCTTGTCCTGAATTTTGGCTTTAACGTTGTCAATTGTGTCTGAGCT---T 39329 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || ||||| || |||||||||||||| || |||||||| Sbjct 39330 TCAACTTCAAGGGTAATGGTCTTTCCTGTCAGAGTCTTGACAAAGATCTGCAT 39382 Score = 113 bits (124), Expect = 1e-19 Identities = 170/238 (71%), Gaps = 13/238 (5%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || ||||| | || ||||| | ||| || ||||| || || |||| Sbjct 39608 CATG-CCACCACGAAGTCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTGTAGT 39666 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || || || || || || | |||||| |||||||| |||| | || || | Sbjct 39667 CTGCAAGGGTACGGCCATCCTCCAGTTGTTTCCCTGCGAAAATCAATCTTTGCTGG---T 39723 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GC 288415 ||||| ||||| || || ||||||||||| ||||| || || || || | || || Sbjct 39724 CTGGGGGAATTCCCTCCTTGTCCTGGATTTTGGCTTTGACATTGTCAATTGTGTCTGAGC 39783 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| ||||| || ||||| ||||| || ||||| ||||| || || || ||||| Sbjct 39784 T---TTCAACTTCAAGGGTGATGGTCTTTCCTGTCAGGGTCTTAACAAAGATTTGCAT 39838 Score = 111 bits (122), Expect = 4e-19 Identities = 169/238 (71%), Gaps = 12/238 (5%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | ||| || | || | ||| || || ||||||||||||| Sbjct 38695 CATGGCCTCCACGAAGACGAAGAACCAAGTGCAGGGTGGACTCCTTCTGGATATTATAGT 38754 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || || | || || || | || || || || ||||| || | |||||| || Sbjct 38755 CCGCAAGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTG---AT 38811 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GC 288415 || || |||||||| || ||||| ||||| |||||||| || || |||| ||| || Sbjct 38812 CTGGAGGAATTCCTTCCTTGTCCTGAATTTTTGCTTTCACATTATCAATAGTATCTGAGC 38871 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || | ||||| |||||||| || || ||||| ||||| || ||||| Sbjct 38872 TC---TCCACCTCCAAAGTGATTGTCTTCCCTGTAAGTGTCTTCACGAAAATTTGCAT 38926 Score = 111 bits (122), Expect = 4e-19 Identities = 167/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || || | || ||||| | ||| || ||||| || ||||| | Sbjct 39836 CATG-CCACCCCGAAGCCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTATAAT 39894 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || || || || || || | |||||| || || ||||||| | ||| ||| | Sbjct 39895 CTGCAAGGGTACGACCATCCTCCAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAG 39954 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCG 288418 || |||||||| || || || ||||| ||||| || || || |||| || ||| Sbjct 39955 GGGGAATTCCTTCCTTGTCTTGAATTTTTGCTTTGACATTATCAATAGTGTCAGAACTC- 40013 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| || || ||||| || || || ||||| || || |||||||| Sbjct 40014 --TCTACTTCGAGAGTTATTGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 40066 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| ||||| || || || || | || || || | ||||| || || || Sbjct 38964 TCCTTTTGGATGTTATAATCAGCAAGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAAT 39023 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | || || |||||||| || || || || || || ||||| Sbjct 39024 ATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGAATCTTAGCCTTAACGTTA 39083 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| ||||||||| || || | |||||||| || ||||||||| Sbjct 39084 TCAATCGTATCAGAGCT---TTCTACTTCTAGGGTAACGGTCTTCCCAGTAAGAGTCTTG 39140 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 39141 ACAAAGATCTGCAT 39154 >seq42370 Length=41228 Score = 129 bits (142), Expect = 1e-24 Identities = 170/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || || | |||||||||| || |||||||| ||||| || ||||| Sbjct 10204 CCACCGCGAAGCCTCAAGACGAGATGAAGGGTCGACTCTTTTTGAATATTGTAATCGGCA 10145 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 || || || || || || ||||| || || || ||||| || | |||| | | | Sbjct 10144 AGAGTCCGGCCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGA--- 10088 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGAT 288420 ||||| ||||| |||||||| ||||| || || ||||| || |||| ||| ||| Sbjct 10087 GGGATCCCTTCCTTATCCTGAATTTTAGCCTTGACGTTGTCAATAGTGTCGGAACTC--- 10031 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || |||||||| ||||| || || || || ||||||||||| Sbjct 10030 TCAACCTCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTAACAAATATCTGCAT 9978 Score = 102 bits (112), Expect = 2e-16 Identities = 164/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | ||| | ||| || || || | ||| ||| || || ||||| || || || Sbjct 10888 CCGCCCCTGAGACGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCC 10829 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| || || | || || || |||||||| || | ||| ||| || ||| Sbjct 10828 AAAGTACGTCCATCCTCGAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGA---TCCGGG 10772 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || || || ||||||||||| || || ||||| || ||||| | ||| |||| Sbjct 10771 GGAATCCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCTATGGTATCTGAGCTC--- 10715 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || ||||| |||| |||||||| ||||||||||| Sbjct 10714 TCAACCTCCAGAGTAATAGTTTTCCCTGTCAATGTCTTGACAAATATCTGCAT 10662 >seq65811 Length=66007 Score = 118 bits (130), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || | |||| ||| ||| ||||| ||||| |||||||| Sbjct 55009 CCTCCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCGGCC 55068 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| ||||| || | || || || |||||||||| | || || ||| Sbjct 55069 AAGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGGA 55128 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 || ||||| || || || ||||| || || ||||| || || | ||| ||| || Sbjct 55129 ATGCCTTCCTTGTCTTGAATTTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTC---TCA 55185 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||||||| ||||| ||||||| |||||||| || || ||||| Sbjct 55186 ACTTCGAGCGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 55235 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | |||| ||| ||| || || || || ||||| || Sbjct 54781 CCACCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCC 54840 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| |||||||| | || ||||| || ||||||| | ||| || ||| Sbjct 54841 AAGGTGCGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 54900 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || || || || || || ||||||||||| || || | || |||| || Sbjct 54901 ATACCCTCCTTGTCTTGAATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTC---TCA 54957 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || || ||||| ||||||||||| || || ||||| Sbjct 54958 ACCTCCAGGGTGATGGTTTTTCCGGTGAGAGTCTTGACAAAGATTTGCAT 55007 Score = 105 bits (116), Expect = 2e-17 Identities = 143/197 (73%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || || || || || || | ||||| || | || ||||| || ||| Sbjct 55273 TCCTTTTGAATGTTGTAATCCGCAAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCAAAG 55332 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | || || ||||| ||||| || ||||||||||| || || || ||| Sbjct 55333 ATCAGCCTTTGCTGG---TCTGGAGGAATTCCCTCCTTATCCTGGATCTTTGCCTTGACG 55389 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || |||| || |||||||| ||||| ||||| ||||| |||||| Sbjct 55390 TTATCGATGGTGTCGGAGCTC---TCGACTTCGAGAGTGATGGTCTTTCCGGTAAGAGTC 55446 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| |||||||| Sbjct 55447 TTAACGAAGATCTGCAT 55463 >seq65142 Length=25918 Score = 107 bits (118), Expect = 5e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||||||||| || || || || || || | ||||||||||| || Sbjct 5039 ATACCTTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGCTCGATTCAACC 5098 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| ||||| ||||| || || ||||||||||||||||| Sbjct 5099 TCGAGCGTGATGGTCTTGCCGGTTAGGGTTTTGACGAATATCTGCAT 5145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178455804036756