Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq39070 120 4e-22 >seq39070 Length=11651 Score = 120 bits (132), Expect = 4e-22 Identities = 376/571 (66%), Gaps = 25/571 (4%) Strand=Plus/Minus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || || ||||||| |||||| ||||| || |||||||| | ||| || || |||||| Sbjct 8219 TATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAAACTAATCAACTCCATC 8160 Query 125819 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCA---CCCCAATCTGTTTGAGGAGA 125875 |||| || ||||||| | | ||| || || ||| || || || | Sbjct 8159 CAATCGAACGGGTTCTGAACATCATACATTTTTC-CATATCCCAAAGCTCCC--AGCAAT 8103 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 | || | || | |||||||||| ||| || |||||| || | || | Sbjct 8102 CTGTCTGCAACAAATTCAATGTACTGGCTCATTAGGTCTCCGTTCATCCCCACCAGTGCA 8043 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || || ||||| | | |||| |||||||||| ||||| || || ||||| | Sbjct 8042 CAGGGTAGGGCGTCACACACGAACTCCTTCTCAATATCCACTGCATCAGCAACGATTCCC 7983 Query 125996 TGAATGGTGTCCACCC-CAGGTCTATTG--CGCAA-AGTCTTGAAGAGTTCCACGGCAAA 126051 || | ||| | | ||| | ||| |||| || || | ||||| |||||| Sbjct 7982 CTGATTCTTTCCTCGCTCAGCT---TTGACCGCAGCAGACT-GTAGAGTAAGCAGGCAAA 7927 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||||| || || || || || || | || ||||||||| | ||| ||||| Sbjct 7926 GTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTTAATCCGGGCAT 7867 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 || ||||| ||||| | ||| || ||||||||||| |||||||| || |||||||| Sbjct 7866 AAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATTCCCTC 7807 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGA-CTTTGTGTCAAACCACT 126230 ||||| || || || | || ||||||||||||||| ||| | | || ||| | Sbjct 7806 AACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATCGATCCAACGA-- 7749 Query 126231 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG-- 126288 | ||||| | ||||| || || | ||| || | ||||| ||||| |||||| Sbjct 7748 --AGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACGAAAGAGCC 7691 Query 126289 -TTCCTTCTTTTCTGATGGATCTTTGATGTA 126318 | ||||| ||||| ||| || ||||| Sbjct 7690 TATGCTTCTCGTCTGA---ATCCTTTATGTA 7663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596761458310160