Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq65811 120 3e-22 seq53817 120 3e-22 seq73807 109 6e-19 seq72241 98.7 1e-15 seq67817 98.7 1e-15 seq55661 98.7 1e-15 seq64144 93.3 5e-14 seq42370 86.0 7e-12 >seq65811 Length=66007 Score = 120 bits (132), Expect = 3e-22 Identities = 168/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | |||||| || | ||| ||||||||||||||||| || || Sbjct 55008 ACCTCCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCGGC 55067 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || ||||||||||| ||||| || | || |||||||| | ||| Sbjct 55068 CAAGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGG 55127 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | || ||||||| | ||| |||| | | ||| | | | ||||| |||| | Sbjct 55128 AATGCCTTCCTTGT-CTTGAATTTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTC---T 55183 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||| ||||||||| || || || | ||||| |||||||||||||| Sbjct 55184 CAACTTCGAGCGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 55235 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| ||||||| ||||| | || || |||||||||||||| || Sbjct 54389 CTCCTTCTGGATATTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTACCAGCAAA 54448 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | | ||||||||| | ||| | | ||||||||| ||||||| || | | Sbjct 54449 GATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATTTTTGCCTTCACATT 54508 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| ||||| || | ||||| || || || || | ||||| Sbjct 54509 GTCAATGGTGTCAGAGCTC---TCCACCTCCAGGGTGATAGTCTTACCGGTCAAGGTCTT 54565 Query 42194 TACAAAGATTTGCATT 42209 |||||||| |||||| Sbjct 54566 CACAAAGATCTGCATT 54581 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | ||| ||||| ||||| ||||| || |||| || || | Sbjct 54792 ACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCC 54851 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || || || || | | ||||||||| | ||| | | |||||| Sbjct 54852 GTCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCCTCCTT 54911 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCG---CTCGATTCCACATCGACCG 42168 ||| ||| | || | || ||| | || | ||||| ||| || || || | | Sbjct 54912 GTCT-TGAATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTC---TCAACCTCCAGGG 54967 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||||||| || || || ||||| |||||||||||||| Sbjct 54968 TGATGGTTTTTCCGGTGAGAGTCTTGACAAAGATTTGCAT 55007 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || ||||| | ||||| || | || |||||||||||| |||||||| || Sbjct 55236 ACCTCCCCTCAAACGGAGGACCAAGTGGAGGGTAGACTCCTTTTGAATGTTGTAATCCGC 55295 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || |||||||| || || || || || | |||||||| | || Sbjct 55296 AAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGAGG 55355 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | |||||| ||| ||| ||| |||| | | | ||||| |||| || Sbjct 55356 AATTCCCTCCTTATCCTGGATCTTTGCCTTGACGTTATCGATGGTGTCGGAGCTC---TC 55412 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| |||||||| || || || || ||||| || ||||| ||||| Sbjct 55413 GACTTCGAGAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 55463 >seq53817 Length=15024 Score = 120 bits (132), Expect = 3e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| ||||| ||||| | |||| || ||||||||||| ||||| Sbjct 3666 TCCTTCTGGATGTTGTAGTCAGCTAGAGTTCTGCCGTCTTCGAGCTGCTTACCGGCGAAG 3725 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 ||||| ||||||||||| | ||| | || |||||||||| ||| |||| | |||| | Sbjct 3726 ATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCC-TGAATTTTGGCCTTGACATT 3784 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || || ||||| || || | |||||||| || ||||| || || || || Sbjct 3785 GTCAATGGTATCCGAGGATTCGACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTTTTCAC 3844 Query 42197 AAAGATTTGCATTTT 42211 ||||| |||||||| Sbjct 3845 GAAGATCTGCATTTT 3859 >seq73807 Length=69832 Score = 109 bits (120), Expect = 6e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || ||||||||||||||||||| || ||||||||| || || |||||||| Sbjct 38928 CCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGCA 38987 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | || || ||||| ||||| || ||||| || ||||||||||| | || Sbjct 38988 AGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGGA 39047 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTC---GCTCGATTC 42157 | || || |||| | ||| | || | | | || | | | ||| || ||| ||| Sbjct 39048 ATGCCTTCTTTGT-CTTGAATCTTAGCCTTAACGTTATCAATCGTATCAGAGCT---TTC 39103 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || | ||| || || || || ||||| |||||||| ||||| Sbjct 39104 TACTTCTAGGGTAACGGTCTTCCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| || | || | ||| |||||||||||||||||| || || || || || | Sbjct 39396 CGCAAAACAAGGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCTGCAAGGGTACGGCCA 39455 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || ||||| || || | || ||||| || | || | | ||||||| Sbjct 39456 TCCTCAAGCTGTTTCCCAGCAAAAATCAAACGTTGCTGATCAGGGGGAATTCCCTCCTTG 39515 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| ||| |||| | ||||| | | | ||||| ||| ||| || || | || Sbjct 39516 TCC-TGAATTTTGGCTTTGACATTGTCAATTGTGTCTGAGCT---TTCGACTTCCAGGGT 39571 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || || || || ||||| || ||||||||||| Sbjct 39572 GATGGTCTTTCCTGTCAGGGTCTTAACGAAGATTTGCAT 39610 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 ||| || | ||| | ||| ||||||||| || ||||| || || || || || | || Sbjct 39626 CAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTGTAGTCTGCAAGGGTACGGCCATC 39685 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || || || || || ||||| || | || |||||||| | || | | ||||||||| Sbjct 39686 CTCCAGTTGTTTCCCTGCGAAAATCAATCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTC 39745 Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGAT 42172 | |||||| ||||| | | | ||||| ||| ||| || || | ||||| Sbjct 39746 CTGGATTTTGGCTTTGACATTGTCAATTGTGTCTGAGCT---TTCAACTTCAAGGGTGAT 39802 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || || ||||| |||||||||||||| Sbjct 39803 GGTCTTTCCTGTCAGGGTCTTAACAAAGATTTGCAT 39838 >seq72241 Length=55963 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| |||||||||||||| || || || | |||| || |||||||| || ||||| Sbjct 40211 CTCCTTCTGAATATTGTAATCCGCAAGGGTTCTACCGTCTTCCAGCTGCTTCCCGGCGAA 40270 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || |||||||| || | || | | ||||| | | ||| | |||| | | ||| Sbjct 40271 AATTAGGCGCTGCTGATCAGGAGGAATTCCTTCCTTAT-CTTGAATCTTTGCCTTAACGT 40329 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || |||||| || | |||||||||||||| ||||| || || | Sbjct 40330 TGTCAATAGTATCAGAACTTTCCACCTCAAGAGTGATGGTTTTGCCTGTTAGAGTTTTGA 40389 Query 42196 CAAAGATTTGCAT 42208 |||| |||||||| Sbjct 40390 CAAAAATTTGCAT 40402 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||| |||||| || |||||||||||||||||||| ||| | || || |||||| Sbjct 39744 TGCAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTACGCCCATCTTCAAGCTGC 39803 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 || ||||||||||| || | |||||| || | || | | ||| |||||| Sbjct 39804 TTTCCAGCGAATATAAGCCTCTGCTGATCCGGGGGAATTCCCTCTTTGTCC 39854 >seq67817 Length=4127 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| ||||| || || | | ||| || || ||||| || ||||| Sbjct 1423 TCCTTCTGGATGTTGTAGTCAGCTAGTGTTCTGTAGTCTTCGAGTTGCTTCCCGGCGAAG 1482 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | ||| | || |||||||||| ||||| |||| | Sbjct 1483 ATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCGAAATTTTGGCCTTGACATTG 1542 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | || | | ||||| || || | |||||||| || ||||| || || || || Sbjct 1543 TCAATGGTATTGGAGGATTCGACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTTTTCACG 1602 Query 42198 AAGATTTGCATTTT 42211 ||||| | |||||| Sbjct 1603 AAGATCTACATTTT 1616 >seq55661 Length=20824 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/195 (72%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| | ||| || || | || || || |||||||| | ||||| Sbjct 2569 TCCTTCTGGATGTTGTAGTTAGCTAGTGTTCTGTCATCTTCGAGCTGCTTCTCGGCGAAG 2510 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 ||||| |||||||| ||| ||| | ||||||||||||| ||| |||| | |||| | Sbjct 2509 ATGAGACGCTGCTGTCCGG-TGGGATGCTCTCCTTGTCC-TGAATTTTGGCCTTGACATT 2452 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || ||| ||||| || || | |||||||| || ||| | || || || || Sbjct 2451 GTCAATGGTATCGGAGGATTCGACCTCAAAGGTGATGGTCTTTCCCATGAGGGTTTTCAC 2392 Query 42197 AAAGATTTGCATTTT 42211 ||||| |||||||| Sbjct 2391 GAAGATCTGCATTTT 2377 >seq64144 Length=11632 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCC-GCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||| || || ||||| ||||| || || | ||| ||| || || ||||| || ||||| Sbjct 9130 TCCTTATGGATGTTGTAGTCAGCTAGTGTTCTGCT-GTCTTCGAGTTGCTTCCCGGCGAA 9188 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 | ||| ||||||||||| ||| | || ||||||||| ||||| |||| | Sbjct 9189 GAGGAGACGCTGCTGGTCTAGTGGGATGCCGTCCTTGTCCGAAATTTTGGCCTTGACATT 9248 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || ||| ||||| || || | |||||||| || ||||| || || || || Sbjct 9249 GTCAATGGTATCGGAGGATTCAACCTCAAGAGTGATGGTCTTCCCCGTGAGGGTTTTCAC 9308 Query 42197 AAAGATTTGCATTTT 42211 ||||| |||||||| Sbjct 9309 GAAGATCTGCATTTT 9323 >seq42370 Length=41228 Score = 86.0 bits (94), Expect = 7e-12 Identities = 141/197 (72%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| ||||||||||||||||| || |||||||| | || || | ||||| ||||| || Sbjct 10169 CTCTTTTTGAATATTGTAATCGGCAAGAGTCCGGCCATCCTCCAATTGCTTCCCAGCAAA 10110 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| | |||||||| | || | | ||||| ||| ||| |||| | |||| || Sbjct 10109 GATGAGCCTTTGCTGGTCCGGAGGGATCCCTTCCTTATCC-TGAATTTTAGCCTTGA-CG 10052 Query 42136 TCG-CCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | | | | |||||| ||| || || |||| || || || || || ||||| || Sbjct 10051 TTGTCAATAGTGTCGGAACTC---TCAACCTCGAGAGTAATCGTCTTTCCGGTTAGGGTT 9995 Query 42192 TTTACAAAGATTTGCAT 42208 || ||||| || ||||| Sbjct 9994 TTAACAAATATCTGCAT 9978 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||||| ||||| ||| | ||| |||||||||||| || |||||||| Sbjct 10661 ACCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGC 10602 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | || || | |||||| || || || || | || ||||||||| | || Sbjct 10601 TAGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGG 10542 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||| ||| ||| | |||| || | | | | || || ||| | Sbjct 10541 AATCCCTTCCTTATCC-TGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTCAA 10483 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || |||||||| || || || ||||| ||||| || ||||| Sbjct 10482 CCTCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||||||||||||||||| ||| || | || || |||||||| |||||||| Sbjct 10852 TCCTTCTGAATATTGTAATCAGCCAAAGTACGTCCATCCTCGAGCTGCTTCCCAGCGAAG 10793 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||||| | |||||| || | || | | |||||| ||| ||| || Sbjct 10792 ATGAGCCTCTGCTGATCCGGGGGAATCCCCTCCTTATCCTGGATCTT 10746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542674326731680