Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq72241 129 6e-25
seq71687 122 9e-23
seq65811 113 4e-20
seq53817 105 7e-18
seq73807 104 2e-17
seq42370 104 2e-17
seq67817 84.2 2e-11
>seq72241
Length=55963
Score = 129 bits (142), Expect = 6e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294
|| ||||| | || || || || ||||| |||||||| || | ||| | |||||||
Sbjct 40194 ACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCAAGGGTTCTACCGTCTTCC 40253
Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354
|||||||| ||||| |||| || |||||||| || |||||||||||||| || |||||
Sbjct 40254 AGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGAATTCCTTCCTTATCTTGA 40313
Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414
|| ||| ||| || || | |||||| ||||| || | ||| | ||| |||
Sbjct 40314 ATCTTTGCCTTAACGTTGTCAATAGTATCAGAACTTTCCACCTCAAGAGTGATGGTTTTG 40373
Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || | |||||| || |||||||||||
Sbjct 40374 CCTGTTAGAGTTTTGACAAAAATTTGCAT 40402
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294
|| ||||||| || ||||| ||||| || |||||||| |||| || | |||| ||
Sbjct 40422 ACGAGATGAAGAGTAGATTCCTTTTGGATATTGTAATCGGCGAGAGTCCTGCCGTCCTCC 40481
Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354
| |||||| ||||| | || |||| |||||| || ||||||||||| || || || ||
Sbjct 40482 AACTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCCTTATCCTGA 40541
Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414
|| || ||| || || | |||||| || ||||| | ||| | ||||||
Sbjct 40542 ATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTCTCAACTTCAAGAGTAATCGTCTTG 40601
Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||||| |||||| || || || |||||
Sbjct 40602 CCGGTCAGAGTTTTAACAAATATCTGCAT 40630
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293
||| ||||||| || || || ||||||||||| ||||| || | || || |||||||
Sbjct 39965 CACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGCTAGAGTACGACCGTCTTC 40024
Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353
| |||||| |||||| | || || | || || || |||||||| |||||||| || ||
Sbjct 40025 CAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGGAATCCCTTCTTTATCCTG 40084
Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
|| ||| ||| ||| || | |||||| || || || | ||| | || ||
Sbjct 40085 AATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCAACCTCAAGAGTAATAGTTTT 40144
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || | || || || ||||| |||||
Sbjct 40145 ACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || || |||||||| || | || ||| | |||||||||||||| ||
Sbjct 39750 GTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTACGCCCATCTTCAAGCTGCTTTCCA 39809
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | || |||| |||||| || || |||||||| ||||| || || || || |||
Sbjct 39810 GCGAATATAAGCCTCTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGAATCTTGGTCTTC 39869
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| || | ||||| || || |||| || | ||||| || ||||| ||
Sbjct 39870 ACATTATCTATGGTATCTGAACTCTCAACCTCTAACGTAATCGTCTTCCCAGTCAATGTC 39929
Query 64427 TTTACGAAAATTTGCAT 64443
|| || || || |||||
Sbjct 39930 TTCACAAATATCTGCAT 39946
>seq71687
Length=64904
Score = 122 bits (134), Expect = 9e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| |||||||| | ||| || || || | ||||| || || || ||||||||||| ||
Sbjct 44686 CCACCGCGCAAGCGAAGGACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAATCCGCT 44745
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||| | | || || ||||||||||||||| | ||||||| |||||| || || ||
Sbjct 44746 AAGGTCCTGCCTTCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCCGGTGGG 44805
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| ||||| || ||||| || || ||| ||| || | ||||| || || ||
Sbjct 44806 ATGCCTTCCTTATCTTGGATCTTCGCCTTCACATTGTCAATGGTATCGGAGGATTCAACC 44865
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| | || | |||||| || |||| ||||| ||||| || ||||| ||
Sbjct 44866 TCGAGGGTAATGGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 44915
>seq65811
Length=66007
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || ||||||||||||||||| || | ||| | |||| || |||||||| |||
Sbjct 55267 GTAGACTCCTTTTGAATGTTGTAATCCGCAAGGGTTCTGCCGTCCTCGAGCTGCTTTCCG 55326
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || |||| |||||||| ||||||||||| || || || || || ||| |||
Sbjct 55327 GCAAAGATCAGCCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTTGCCTTG 55386
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| || | || || | || ||||| | ||| | |||||| ||||| | |||
Sbjct 55387 ACGTTATCGATGGTGTCGGAGCTCTCGACTTCGAGAGTGATGGTCTTTCCGGTAAGAGTC 55446
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| || |||||
Sbjct 55447 TTAACGAAGATCTGCAT 55463
Score = 109 bits (120), Expect = 5e-19
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
|||||| | |||| || ||||| || ||||||||||| || || | |||||| ||||
Sbjct 54795 AAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCCGTC 54854
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|||||||||||| |||||| | || | || ||||||||| || ||||| || || || ||
Sbjct 54855 TTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 54914
Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409
||| | | || ||||| || || | || || | || || || | || | ||
Sbjct 54915 TTG-AATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGG 54973
Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
| || ||||| | ||| || || || ||||||||
Sbjct 54974 TTTTTCCGGTGAGAGTCTTGACAAAGATTTGCAT 55007
>seq53817
Length=15024
Score = 105 bits (116), Expect = 7e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || |||| || ||||| || || |||||||| || || | || | ||||
Sbjct 3644 AAGAACAAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTTCTGCCGTC 3703
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| |||||||| ||||| | ||||| ||||||||||| || || || || || || ||
Sbjct 3704 TTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTC 3763
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| ||||| ||| ||| || | ||||| || || || || | || | |||
Sbjct 3764 CTGAATTTTGGCCTTGACATTGTCAATGGTATCCGAGGATTCGACCTCAAGGGTGATGGT 3823
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||| || || | ||||| ||||| || ||||||||
Sbjct 3824 CTTCCCCGTGAGGGTTTTCACGAAGATCTGCATTTT 3859
>seq73807
Length=69832
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293
||| | ||| | || || || ||||| ||||| ||||| || | || | | || ||
Sbjct 38945 CACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGCAAGTGTCCTACCATCCTC 39004
Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353
|||||| || |||||| | || || ||||||||||| || ||||| |||||||| |||||
Sbjct 39005 AAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTG 39064
Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
|| || ||| || || | |||||| | || ||||||| || ||||||||
Sbjct 39065 AATCTTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCTACTTCTAGGGTAACGGTCTT 39124
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || | ||| || || || || |||||
Sbjct 39125 CCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154
Score = 104 bits (114), Expect = 2e-17
Identities = 165/234 (71%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294
|| ||||| | || || || ||||| ||||| |||||||| | ||| || | || ||
Sbjct 39858 ACAAGATGGAGGGTGGACTCCTTTTGTATGTTATAATCTGCAAGGGTACGACCATCCTCC 39917
Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354
|| || ||||| ||| | || | | |||||| || || ||||||||||| || |||||
Sbjct 39918 AGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGGGGAATTCCTTCCTTGTCTTG- 39976
Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
| |||||||||| ||| || | || ||| || ||||| | ||||| |||||
Sbjct 39977 AATTTTTGCTTTGACATTATCAATAGTGTCAGAACTCTCTACTTCGAGAGTTATTGTCTT 40036
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTT----TAATAATGATACACTTAA 64463
||| || | || || || || || ||||| | || |||| ||||| ||||
Sbjct 40037 GCCAGTGAGGGTCTTAACAAAGATCTGCATCTGAAATATTAATAATACAGTTAA 40090
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || || || || || || | ||| | | || || |||||||||||
Sbjct 38730 GTGGACTCCTTCTGGATATTATAGTCCGCAAGGGTCCTGCCATCCTCGAGCTGCTTGCCA 38789
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || |||| ||| || || |||||||||||||| || || || | ||||||||||
Sbjct 38790 GCAAAGATAAGCCTCTGTTGATCTGGAGGAATTCCTTCCTTGTCCTG-AATTTTTGCTTT 38848
Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425
||| || | ||||| | ||||| || | ||| | ||||| || || | ||
Sbjct 38849 CACATTATCAATAGTATCTGAGCTCTCCACCTCCAAAGTGATTGTCTTCCCTGTAAGTGT 38908
Query 64426 TTTTACGAAAATTTGCAT 64443
|| ||||||||||||||
Sbjct 38909 CTTCACGAAAATTTGCAT 38926
>seq42370
Length=41228
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| ||||||| || || || ||||||||||| ||||| || | || | | |||
Sbjct 10645 AGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGCTAGAGTTCTGCCATCT 10586
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | |||||| |||||| | || | | ||||||||| |||||||| ||||| || ||
Sbjct 10585 TCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGAATCCCTTCCTTATCC 10526
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || ||| ||| ||| || | ||||||| || || || | ||| | |||
Sbjct 10525 TGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTCAACCTCAAGAGTAATGGTT 10466
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || || | || || || ||||| |||||
Sbjct 10465 TTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||| | || | || ||||| | ||||| || || || ||||||||||| ||
Sbjct 10432 CCACCGCGAAGCCTCAAGACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 10373
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||| | | || || | |||||| |||||| | || || |||||||| || ||||||
Sbjct 10372 AAGGTTCTACCATCCTCCAACTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGA 10313
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| || || || ||||| || || ||| || || | ||||||| || ||
Sbjct 10312 ATCCCCTCCTTATCTTGAATCTTCGCCTTAACGTTATCAATTGTATCAGAACTCTCGACC 10253
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||||| || |||| |||||| || || ||||||||
Sbjct 10252 TCCAAGGTAATCGTCTTACCAGTCAGAGTTTTAACAAAGATTTGCAT 10206
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||| | || | || ||||||| ||||| ||||||||||| |||||||| ||
Sbjct 10204 CCACCGCGAAGCCTCAAGACGAGATGAAGGGTCGACTCTTTTTGAATATTGTAATCGGCA 10145
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | || || | ||||| || ||| | ||||||| |||||||| |||||
Sbjct 10144 AGAGTCCGGCCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGAGGG 10085
Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359
|| ||||| || || || |||||
Sbjct 10084 ATCCCTTCCTTATCCTGAATTTT 10062
>seq67817
Length=4127
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || ||||| || ||||| || || |||||||| || || | || | |||
Sbjct 1401 AAGAACAAGGTGAATGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCTGTAGTC 1460
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| || ||||| ||||| | ||||| ||||||||||| || || || || || || ||
Sbjct 1461 TTCGAGTTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTC 1520
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
||||| ||| ||| || | |||| || || || || | || | |||
Sbjct 1521 CGAAATTTTGGCCTTGACATTGTCAATGGTATTGGAGGATTCGACCTCAAGGGTGATGGT 1580
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||| || || | ||||| ||||| || | ||||||
Sbjct 1581 CTTCCCCGTGAGGGTTTTCACGAAGATCTACATTTT 1616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499149514600880
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