Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq72241 129 6e-25 seq71687 122 9e-23 seq65811 113 4e-20 seq53817 105 7e-18 seq73807 104 2e-17 seq42370 104 2e-17 seq67817 84.2 2e-11 >seq72241 Length=55963 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || || || || ||||| |||||||| || | ||| | ||||||| Sbjct 40194 ACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCAAGGGTTCTACCGTCTTCC 40253 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 |||||||| ||||| |||| || |||||||| || |||||||||||||| || ||||| Sbjct 40254 AGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGAATTCCTTCCTTATCTTGA 40313 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || ||| ||| || || | |||||| ||||| || | ||| | ||| ||| Sbjct 40314 ATCTTTGCCTTAACGTTGTCAATAGTATCAGAACTTTCCACCTCAAGAGTGATGGTTTTG 40373 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | |||||| || ||||||||||| Sbjct 40374 CCTGTTAGAGTTTTGACAAAAATTTGCAT 40402 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || ||||| ||||| || |||||||| |||| || | |||| || Sbjct 40422 ACGAGATGAAGAGTAGATTCCTTTTGGATATTGTAATCGGCGAGAGTCCTGCCGTCCTCC 40481 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | |||||| ||||| | || |||| |||||| || ||||||||||| || || || || Sbjct 40482 AACTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCCTTATCCTGA 40541 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || || ||| || || | |||||| || ||||| | ||| | |||||| Sbjct 40542 ATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTCTCAACTTCAAGAGTAATCGTCTTG 40601 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||| |||||| || || || ||||| Sbjct 40602 CCGGTCAGAGTTTTAACAAATATCTGCAT 40630 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||||| || || || ||||||||||| ||||| || | || || ||||||| Sbjct 39965 CACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGCTAGAGTACGACCGTCTTC 40024 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | |||||| |||||| | || || | || || || |||||||| |||||||| || || Sbjct 40025 CAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGGAATCCCTTCTTTATCCTG 40084 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || ||| ||| ||| || | |||||| || || || | ||| | || || Sbjct 40085 AATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCAACCTCAAGAGTAATAGTTTT 40144 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | || || || ||||| ||||| Sbjct 40145 ACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || || |||||||| || | || ||| | |||||||||||||| || Sbjct 39750 GTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTACGCCCATCTTCAAGCTGCTTTCCA 39809 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || |||| |||||| || || |||||||| ||||| || || || || ||| Sbjct 39810 GCGAATATAAGCCTCTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGAATCTTGGTCTTC 39869 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||||| || || |||| || | ||||| || ||||| || Sbjct 39870 ACATTATCTATGGTATCTGAACTCTCAACCTCTAACGTAATCGTCTTCCCAGTCAATGTC 39929 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 39930 TTCACAAATATCTGCAT 39946 >seq71687 Length=64904 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || |||||||| | ||| || || || | ||||| || || || ||||||||||| || Sbjct 44686 CCACCGCGCAAGCGAAGGACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAATCCGCT 44745 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| | | || || ||||||||||||||| | ||||||| |||||| || || || Sbjct 44746 AAGGTCCTGCCTTCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCCGGTGGG 44805 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || || ||| ||| || | ||||| || || || Sbjct 44806 ATGCCTTCCTTATCTTGGATCTTCGCCTTCACATTGTCAATGGTATCGGAGGATTCAACC 44865 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || |||| ||||| ||||| || ||||| || Sbjct 44866 TCGAGGGTAATGGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 44915 >seq65811 Length=66007 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||||||||||||||| || | ||| | |||| || |||||||| ||| Sbjct 55267 GTAGACTCCTTTTGAATGTTGTAATCCGCAAGGGTTCTGCCGTCCTCGAGCTGCTTTCCG 55326 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||||| ||||||||||| || || || || || ||| ||| Sbjct 55327 GCAAAGATCAGCCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTTGCCTTG 55386 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || | || ||||| | ||| | |||||| ||||| | ||| Sbjct 55387 ACGTTATCGATGGTGTCGGAGCTCTCGACTTCGAGAGTGATGGTCTTTCCGGTAAGAGTC 55446 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 55447 TTAACGAAGATCTGCAT 55463 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | |||| || ||||| || ||||||||||| || || | |||||| |||| Sbjct 54795 AAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCCGTC 54854 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||||||||| |||||| | || | || ||||||||| || ||||| || || || || Sbjct 54855 TTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 54914 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | || ||||| || || | || || | || || || | || | || Sbjct 54915 TTG-AATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGG 54973 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || ||||| | ||| || || || |||||||| Sbjct 54974 TTTTTCCGGTGAGAGTCTTGACAAAGATTTGCAT 55007 >seq53817 Length=15024 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| || ||||| || || |||||||| || || | || | |||| Sbjct 3644 AAGAACAAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTTCTGCCGTC 3703 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| |||||||| ||||| | ||||| ||||||||||| || || || || || || || Sbjct 3704 TTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTC 3763 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || ||||| ||| ||| || | ||||| || || || || | || | ||| Sbjct 3764 CTGAATTTTGGCCTTGACATTGTCAATGGTATCCGAGGATTCGACCTCAAGGGTGATGGT 3823 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| || || | ||||| ||||| || |||||||| Sbjct 3824 CTTCCCCGTGAGGGTTTTCACGAAGATCTGCATTTT 3859 >seq73807 Length=69832 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | || || || ||||| ||||| ||||| || | || | | || || Sbjct 38945 CACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGCAAGTGTCCTACCATCCTC 39004 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 |||||| || |||||| | || || ||||||||||| || ||||| |||||||| ||||| Sbjct 39005 AAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTG 39064 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| || || | |||||| | || ||||||| || |||||||| Sbjct 39065 AATCTTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCTACTTCTAGGGTAACGGTCTT 39124 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | ||| || || || || ||||| Sbjct 39125 CCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154 Score = 104 bits (114), Expect = 2e-17 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || || || ||||| ||||| |||||||| | ||| || | || || Sbjct 39858 ACAAGATGGAGGGTGGACTCCTTTTGTATGTTATAATCTGCAAGGGTACGACCATCCTCC 39917 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || || ||||| ||| | || | | |||||| || || ||||||||||| || ||||| Sbjct 39918 AGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGGGGAATTCCTTCCTTGTCTTG- 39976 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 | |||||||||| ||| || | || ||| || ||||| | ||||| ||||| Sbjct 39977 AATTTTTGCTTTGACATTATCAATAGTGTCAGAACTCTCTACTTCGAGAGTTATTGTCTT 40036 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTT----TAATAATGATACACTTAA 64463 ||| || | || || || || || ||||| | || |||| ||||| |||| Sbjct 40037 GCCAGTGAGGGTCTTAACAAAGATCTGCATCTGAAATATTAATAATACAGTTAA 40090 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || || || || || || | ||| | | || || ||||||||||| Sbjct 38730 GTGGACTCCTTCTGGATATTATAGTCCGCAAGGGTCCTGCCATCCTCGAGCTGCTTGCCA 38789 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||| || || |||||||||||||| || || || | |||||||||| Sbjct 38790 GCAAAGATAAGCCTCTGTTGATCTGGAGGAATTCCTTCCTTGTCCTG-AATTTTTGCTTT 38848 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | ||||| | ||||| || | ||| | ||||| || || | || Sbjct 38849 CACATTATCAATAGTATCTGAGCTCTCCACCTCCAAAGTGATTGTCTTCCCTGTAAGTGT 38908 Query 64426 TTTTACGAAAATTTGCAT 64443 || |||||||||||||| Sbjct 38909 CTTCACGAAAATTTGCAT 38926 >seq42370 Length=41228 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||||| || || || ||||||||||| ||||| || | || | | ||| Sbjct 10645 AGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGCTAGAGTTCTGCCATCT 10586 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| |||||| | || | | ||||||||| |||||||| ||||| || || Sbjct 10585 TCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGAATCCCTTCCTTATCC 10526 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| || | ||||||| || || || | ||| | ||| Sbjct 10525 TGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTCAACCTCAAGAGTAATGGTT 10466 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || || ||||| ||||| Sbjct 10465 TTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | || | || ||||| | ||||| || || || ||||||||||| || Sbjct 10432 CCACCGCGAAGCCTCAAGACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 10373 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| | | || || | |||||| |||||| | || || |||||||| || |||||| Sbjct 10372 AAGGTTCTACCATCCTCCAACTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGA 10313 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| || || ||| || || | ||||||| || || Sbjct 10312 ATCCCCTCCTTATCTTGAATCTTCGCCTTAACGTTATCAATTGTATCAGAACTCTCGACC 10253 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || |||| |||||| || || |||||||| Sbjct 10252 TCCAAGGTAATCGTCTTACCAGTCAGAGTTTTAACAAAGATTTGCAT 10206 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | || | || ||||||| ||||| ||||||||||| |||||||| || Sbjct 10204 CCACCGCGAAGCCTCAAGACGAGATGAAGGGTCGACTCTTTTTGAATATTGTAATCGGCA 10145 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || | ||||| || ||| | ||||||| |||||||| ||||| Sbjct 10144 AGAGTCCGGCCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGAGGG 10085 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 || ||||| || || || ||||| Sbjct 10084 ATCCCTTCCTTATCCTGAATTTT 10062 >seq67817 Length=4127 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || ||||| || ||||| || || |||||||| || || | || | ||| Sbjct 1401 AAGAACAAGGTGAATGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCTGTAGTC 1460 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || ||||| ||||| | ||||| ||||||||||| || || || || || || || Sbjct 1461 TTCGAGTTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTC 1520 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||||| ||| ||| || | |||| || || || || | || | ||| Sbjct 1521 CGAAATTTTGGCCTTGACATTGTCAATGGTATTGGAGGATTCGACCTCAAGGGTGATGGT 1580 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| || || | ||||| ||||| || | |||||| Sbjct 1581 CTTCCCCGTGAGGGTTTTCACGAAGATCTACATTTT 1616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499149514600880