Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq72241 96.9 3e-15 seq73807 91.5 1e-13 seq65811 89.7 5e-13 seq42370 89.7 5e-13 seq53817 86.0 6e-12 >seq72241 Length=55963 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || | || |||||| || | ||| | | ||||||||||||||||| || || ||| Sbjct 39948 CCACCCCTCAGACGCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGCT 40007 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| ||| || | || || |||| | |||| || | ||||| |||||||| Sbjct 40008 -AGAGTACGACCGTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGG 40066 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || |||||||| || ||| | |||| || | | || | ||| || | || | Sbjct 40067 AATCCCTTCTTTATC-CTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCAA 40125 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||||||||| || || || |||||||||||||| Sbjct 40126 CCTCAAGAGTAATAGTTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174 >seq73807 Length=69832 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | ||||||||| || ||||| | ||||||||||||| ||||| || || Sbjct 38927 GCCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGC 38986 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | ||||| || |||||||||| | | || |||||||| ||||| || || Sbjct 38987 AAGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGG 39046 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || | |||| | || | || || | || | Sbjct 39047 AATGCCTTCTTTGTC-TTGAATCTTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCTA 39105 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || || ||||| ||||| || ||||| |||||||| Sbjct 39106 CTTCTAGGGTAACGGTCTTCCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154 >seq65811 Length=66007 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | || ||||||||||| ||||||||| | Sbjct 55009 CCTCCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCGGCC 55068 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || ||||||| |||| | | || ||||| || || Sbjct 55069 AAGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGGA 55128 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||| | |||| | || | |||||||| ||| || Sbjct 55129 ATGCCTTCCTTGTC-TTGAATTTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCAAC 55187 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | || || || |||| || || ||||| || ||||| Sbjct 55188 TTCGAGCGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 55235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | || ||||| |||||||||||||| | Sbjct 54781 CCACCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCC 54840 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || || || |||| | |||| | | ||| ||||| || || Sbjct 54841 AAGGTGCGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 54900 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | ||| | ||| || | |||||||| ||| | Sbjct 54901 ATACCCTCCTTGTC-TTGAATCTTGGCTTTCACGTTG-TCAATGGTGTCGGAGCTCTCAA 54958 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| || || ||||| || ||||| || ||||| Sbjct 54959 CCTCCAGGGTGATGGTTTTTCCGGTGAGAGTCTTGACAAAGATTTGCAT 55007 >seq42370 Length=41228 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||| |||||||| ||||| ||| | ||| || || Sbjct 10190 CAAGACGAGATGAAGGGTCGACTCTTTTTGAATATTGTAATCGGCAAGAGTCCGGCCATC 10131 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 ||| | ||| || || | | |||| || | || ||||||||||| || ||||| || || Sbjct 10130 CTCCAATTGCTTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGAGGGATCCCTTCCTTATC 10071 Query 138522 GGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 ||| |||| | || | ||| || | ||||||| ||| ||||||| || | | Sbjct 10070 -CTGAATTTTAGCCTTGACGTTG-TCAATAGTGTCGGAACTCTCAACCTCGAGAGTAATC 10013 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || || ||||| ||||| |||||||| Sbjct 10012 GTCTTTCCGGTTAGGGTTTTAACAAATATCTGCAT 9978 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || |||| || ||||| || | ||| | | | ||||||||||||||||| || || ||| Sbjct 10660 CCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGCT 10601 Query 138447 CATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| | || | || || | || || |||| | |||| | | ||| |||||||||| Sbjct 10600 -AGAGTTCTGCCA-TCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAG 10543 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCC 138564 | || ||||| || || ||| | |||| |||| | || | || || | || Sbjct 10542 GAATCCCTTCCTTATCC-TGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTCA 10484 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | ||||||||||| || || || |||||||||||||| Sbjct 10483 ACCTCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434 >seq53817 Length=15024 Score = 86.0 bits (94), Expect = 6e-12 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 || ||||| || ||||||||||| ||| | ||| | ||| ||||| || ||||||| Sbjct 3663 GATTCCTTCTGGATGTTGTAGTCAGCT-AGAGTTCTGCCGTCTTCGAGCTGCTTACCGGC 3721 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTT 138537 |||| |||||||| |||||||| || || || || ||||| ||| |||| | || Sbjct 3722 GAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTC-CTGAATTTTGGCCTTGA 3780 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | ||| || | || || ||||| | || | || || || || || ||| Sbjct 3781 CATTG-TCAATGGTATCCGAGGATTCGACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTT 3839 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 3840 TTCACGAAGATCTGCAT 3856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495770467489440