Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq42370 114 9e-21 seq73807 111 1e-19 seq72241 111 1e-19 >seq42370 Length=41228 Score = 114 bits (126), Expect = 9e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||||| || | | || | ||||||||| || || ||||| ||||| ||||| ||| Sbjct 10660 CCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGCT 10601 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| |||| | ||||| || || || || || | ||||| | ||| ||||| || Sbjct 10600 -AGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGG 10542 Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||| |||||||| || ||| ||||| || ||| | || || ||||| | |||| | Sbjct 10541 AATCCCTTCCTTATCCTGAATCTTTGCCTTA-ACATTATCAATTGTATCAGAACTTTCAA 10483 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | |||||||||||||| || || || || |||||||| ||||| Sbjct 10482 CCTCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||||||||| || || || |||||||| |||||| || ||| |||| || Sbjct 9959 AACAAGATGAAGGGTTGATTCCTTCTGTATGTTATAATCGGCTAGGGTTCGGCCGTCCTC 9900 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 ||||||||||| ||| | || | ||||| || || || || || ||||| || Sbjct 9899 CAATTGTTTGCCGGCGAAGATAAGGCGCTGCTGATCCGGAGGGATACCCTCCTTATCTTG 9840 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || || ||| | || ||||||||| | | || || || | || ||||| || Sbjct 9839 GATCTTAGCCTTGACATTATCAATAGTATCGGAACTCTCAACCTCGAGAGTTATGGTCTT 9780 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || ||||| || || || ||||| Sbjct 9779 GCCTGTTAGGGTTTTCACGAAGATCTGCAT 9750 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| || | || || || | ||| || || || || || || ||||||||||| || Sbjct 10432 CCACCGCGAAGCCTCAAGACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 10373 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || |||| | || || || || || || || | |||| ||||| || || || Sbjct 10372 AAGG-TTCTACCATCCTCCAACTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGG 10314 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| || ||||| || ||| || || || | || || ||||| | | || || Sbjct 10313 AATCCCCTCCTTATCTTGAATCTTCGCCTTAACGTTATCAATTGTATCAGAACTCTCGAC 10254 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||||||| || ||||| ||||||||||| ||||| |||||||| Sbjct 10253 CTCCAAGGTAATCGTCTTACCAGTCAGAGTTTTAACAAAGATTTGCAT 10206 >seq73807 Length=69832 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | ||| || || | ||| ||||| || || |||||||||||||| || Sbjct 39610 TGCCACCACGAAGTCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTGTAGTCTG 39669 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | || || | |||||| || ||| | ||||| | || ||||| | Sbjct 39670 CAAGGGTACGGCCATCCTCCAGTTGTTTCCCTGCGAAAATCAATCTTTGCTGGTCTGGGG 39729 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||| |||||||| |||||| ||| ||| | || || || || |||| | Sbjct 39730 GAATTCCCTCCTTGTCCTGGATTTTGGCTTTGACATTGTCAATTGTGTCTGAGCTTTCAA 39789 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| ||||| || |||||||| || || ||||| |||||||| Sbjct 39790 CTTCAAGGGTGATGGTCTTTCCTGTCAGGGTCTTAACAAAGATTTGCAT 39838 Score = 104 bits (114), Expect = 2e-17 Identities = 167/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || || || | ||| ||||| || || ||||||||||| ||||| Sbjct 39838 TGCCACCCCGAAGCCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTATAATCTG 39897 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | || || | |||||||||||| | ||||| | ||| || || | Sbjct 39898 CAAGGGTACGACCATCCTCCAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGGG 39957 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||||||||| |||||| ||| ||| | || ||||| || | | |||| Sbjct 39958 GAATTCCTTCCTTGTCTTGAATTTTTGCTTTGACATTATCAATAGTGTCAGAACTCTCTA 40017 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATA 15186 | || | || || || || || || || || || ||||| || ||| || ||||||| Sbjct 40018 CTTCGAGAGTTATTGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGC--ATCTGAAATA 40074 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | ||||| || || || ||||| || ||||| || Sbjct 39156 CCACCACGGAGTCTCAAGACAAGGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCTGCC 39215 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || | |||||| || || | ||||| || || ||||| ||| Sbjct 39216 AGGGTACGGCCATCCTCAAGTTGTTTCCCTGCAAAAATCAAGCGTTGCTGGTCTGGGGGA 39275 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| |||||||| ||||||| ||| || | || || || || |||| || Sbjct 39276 ATTCCCTCCTTGTCCTGAATTTTGGCTTTAACGTTGTCAATTGTGTCTGAGCTTTCAACT 39335 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||||||| || ||||||||||| || ||||| || ||||| Sbjct 39336 TCAAGGGTAATGGTCTTTCCTGTCAGAGTCTTGACAAAGATCTGCAT 39382 >seq72241 Length=55963 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | || || || | ||| ||||| || || || || || |||||||| Sbjct 40176 CCCCCTCGAAGCCTCAAGACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCA 40235 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| | || || || ||| | || | ||||| || || ||| Sbjct 40236 AGGGTTCTACCGTCTTCCAGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGA 40295 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||| || ||| ||||| || || | || |||||||| | |||| || Sbjct 40296 ATTCCTTCCTTATCTTGAATCTTTGC-CTTAACGTTGTCAATAGTATCAGAACTTTCCAC 40354 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || |||||||| ||||| |||||||| |||||||||||||| Sbjct 40355 CTCAAGAGTGATGGTTTTGCCTGTTAGAGTTTTGACAAAAATTTGCAT 40402 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021 || || || | |||||| ||||| || ||||| || ||||||||| |||| | || || Sbjct 40416 CTCAAGACGAGATGAAGAGTAGATTCCTTTTGGATATTGTAATCGGCGAGAGTCCTGCCG 40475 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 || || || || || || ||| | || | | ||| || || |||||||| ||||| Sbjct 40476 TCCTCCAACTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCCTTA 40535 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||| ||| || || | || || |||||| | | || || || | ||||| Sbjct 40536 TCCTGAATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTCTCAACTTCAAGAGTAATC 40595 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||||||||| ||||| || |||||| Sbjct 40596 GTCTTGCCGGTCAGAGTTTTAACAAATATCTGCATA 40631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357046583089070