Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq72241 143 2e-29
seq42370 140 3e-28
seq73807 138 1e-27
seq65811 113 4e-20
>seq72241
Length=55963
Score = 143 bits (158), Expect = 2e-29
Identities = 172/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||||||||| || ||||| || || ||||||||||||||||| ||||||
Sbjct 40401 ATCCCCCCACGGAGCCTCAAGACGAGATGAAGAGTAGATTCCTTTTGGATATTGTAATCG 40460
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| || | || ||||| || || || ||| | || | | ||||| |||||
Sbjct 40461 GCGAGAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGA 40520
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| || || ||||| ||||| || |||| || | || | || |||||| |||
Sbjct 40521 GGAATTCCCTCCTTATCCTGAATCTTGGCCTTGA-CGTTGTCAATTGTATCGGAACTCTC 40579
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| ||||||| ||| |||||||| |||||||| ||||| || |||||
Sbjct 40580 AACTTCAAGAGTAATCGTCTTGCCGGTCAGAGTTTTAACAAATATCTGCAT 40630
Score = 132 bits (146), Expect = 4e-26
Identities = 170/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || || |||||||| || ||||| || ||||| ||||| || ||||| |||||
Sbjct 40173 ATACCCCCTCGAAGCCTCAAGACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCC 40232
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| |||| || || |||| || || || ||| | || | || ||||| || ||
Sbjct 40233 GCAAGGGTTCTACCGTCTTCCAGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGA 40292
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| ||||| |||||||||| | |||| | | || | || | || || ||| ||
Sbjct 40293 GGAATTCCTTCCTTATCTTGAA-TCTTTGCCTTAACGTTGTCAATAGTATCAGAACTTTC 40351
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || ||||| | |||||||| ||||||||||| |||||||||||||||
Sbjct 40352 CACCTCAAGAGTGATGGTTTTGCCTGTTAGAGTTTTGACAAAAATTTGCATC 40403
Score = 109 bits (120), Expect = 5e-19
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAAT 45186
|||||| ||||| || || || |||||||| || |||||||| ||| | || | |
Sbjct 39962 CAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGCT-AGAGTACGACCGT 40020
Query 45187 CGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTAT 45246
| ||||| || || || || | |||| || ||| || ||||| ||||| ||||||||||
Sbjct 40021 CTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGGAATCCCTTCTTTAT 40080
Query 45247 CTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306
| ||||| ||| |||| || | ||| || ||| || || || ||||||| |
Sbjct 40081 CCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCAACCTCAAGAGTAATAG 40140
Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||| || || || || || |||||||| |||||
Sbjct 40141 TTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174
Score = 105 bits (116), Expect = 6e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || |||||||| || | || ||||| || || || ||||| |||||||||||||||
Sbjct 40629 ATACCACCGCGGAGTCTGAGGACAAGATGGAGAGTAGACTCCTTCTGGATATTATAATCG 40688
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| |||| || || | |||||| || ||| | || | || ||||| || ||
Sbjct 40689 GCGAGGGTTCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGA 40748
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || || || |||||||| || |||| || | || ||||| ||||
Sbjct 40749 GGGATTCCCTCCTTGTCTTGAATCTTAGCCTTGACATTGTCGATTGTATCGGAGCTCTCG 40808
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || || |||| || || |||||||| ||||| || || || ||||||
Sbjct 40809 ACCTCAAGGGTAATTGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCATC 40859
>seq42370
Length=41228
Score = 140 bits (154), Expect = 3e-28
Identities = 171/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || ||||| |||||||| || ||||| || || || || ||||| ||||| ||||||
Sbjct 10207 ATCCCACCGCGAAGCCTCAAGACGAGATGAAGGGTCGACTCTTTTTGAATATTGTAATCG 10148
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || ||| |||||||| || || || | || | | ||||||||||||
Sbjct 10147 GCAAGAGTCCGGCCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGA 10088
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || ||||| ||||| |||||||| |||| || | || | ||||||||| |||
Sbjct 10087 GGGATCCCTTCCTTATCCTGAATTTTAGCCTTGA-CGTTGTCAATAGTGTCGGAACTCTC 10029
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| |||||||||| ||| || |||||||| ||||| ||||| || |||||
Sbjct 10028 AACCTCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTAACAAATATCTGCAT 9978
Score = 132 bits (146), Expect = 4e-26
Identities = 170/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || ||||| |||||||| || ||||| || || || ||||| ||||| || |||||
Sbjct 10435 ATCCCACCGCGAAGCCTCAAGACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCA 10376
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| |||| || ||| ||||| || ||||| || | |||| || ||||| |||||
Sbjct 10375 GCCAAGGTTCTACCATCCTCCAACTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGA 10316
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| || || |||||||||| | || | | | || | || | || || ||| |||
Sbjct 10315 GGAATCCCCTCCTTATCTTGAA-TCTTCGCCTTAACGTTATCAATTGTATCAGAACTCTC 10257
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||| || | |||| ||| || || || |||||||| ||||| |||||||||
Sbjct 10256 GACCTCCAAGGTAATCGTCTTACCAGTCAGAGTTTTAACAAAGATTTGCATC 10205
Score = 111 bits (122), Expect = 1e-19
Identities = 155/215 (72%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAAT 45186
|| ||| ||||| || || || |||||||| || |||||||| ||| | ||| | ||
Sbjct 10646 CAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGCT-AGAGTTCTGCCAT 10588
Query 45187 CGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTAT 45246
| ||||| || || || || | ||||||| ||||||||||| ||||| ||||| ||||
Sbjct 10587 CTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGAATCCCTTCCTTAT 10528
Query 45247 CTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306
| ||||| ||| || | || | || || ||| || || || ||||||| |
Sbjct 10527 CCTGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTCAACCTCAAGAGTAATGG 10468
Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|||| || || || || || |||||||| ||||||
Sbjct 10467 TTTTACCAGTGAGGGTCTTAACAAAAATCTGCATC 10433
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | || ||||| || ||||||||||| || || |||||||||
Sbjct 9979 ATACCACCACGGAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGTATGTTATAATCG 9920
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| |||| || ||||||||||| || ||| | || | || ||||| |||||
Sbjct 9919 GCTAGGGTTCGGCCGTCCTCCAATTGTTTGCCGGCGAAGATAAGGCGCTGCTGATCCGGA 9860
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || || |||||||| || || |||| || | || |||||| |||
Sbjct 9859 GGGATACCCTCCTTATCTTGGATCTTAGCCTTGACATTATCAATAGTATCGGAACTCTCA 9800
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| |||||||| | || ||||| ||||| ||||| || || || |||||
Sbjct 9799 ACCTCGAGAGTTATGGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 9750
>seq73807
Length=69832
Score = 138 bits (152), Expect = 1e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || || |||||||| || ||||| || || || |||||||| || ||||||||
Sbjct 39837 ATGCCACCCCGAAGCCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTATAATCT 39896
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | ||| |||| |||||| || || | ||||||| ||||| || ||
Sbjct 39897 GCAAGGGTACGACCATCCTCCAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGG 39956
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| ||||| || |||||||||||| ||||| || | ||||| ||| |||
Sbjct 39957 GGAATTCCTTCCTTGTCTTGAATTTTTGCTTTGACATTATCAATAGTGTCAGAACTCTCT 40016
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||||||||||| | || ||||| || || || || ||||| || ||||||
Sbjct 40017 ACTTCGAGAGTTATTGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCATC 40067
Score = 114 bits (126), Expect = 1e-20
Identities = 156/215 (73%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187
|||||| | |||||| ||||| ||||||||||| |||||||| | || || |||
Sbjct 38942 CAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGCAAGTGTCCTACCATC 39001
Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247
|| | ||||| || || |||||| || |||||||| || |||||||||||||| ||
Sbjct 39002 CTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 39061
Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306
||||| | || | | | || | || | || || || || ||||| || ||||| |
Sbjct 39062 TTGAA-TCTTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCTACTTCTAGGGTAACGG 39120
Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
| || || || ||||| || ||||| || ||||||
Sbjct 39121 TCTTCCCAGTAAGAGTCTTGACAAAGATCTGCATC 39155
Score = 107 bits (118), Expect = 2e-18
Identities = 164/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| ||||| || || || || || || |||||||||||||| || ||
Sbjct 39153 ATCCCACCACGGAGTCTCAAGACAAGGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCT 39212
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| || | |||||| ||||| | ||||| ||||||||||| ||
Sbjct 39213 GCCAGGGTACGGCCATCCTCAAGTTGTTTCCCTGCAAAAATCAAGCGTTGCTGGTCTGGG 39272
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| || || || || |||| |||| | || | || | || | ||||| || ||
Sbjct 39273 GGAATTCCCTCCTTGTCCTGAA-TTTTGGCTTTAACGTTGTCAATTGTGTCTGAGCTTTC 39331
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || |||| || || || || ||||| || ||||| || |||||
Sbjct 39332 AACTTCAAGGGTAATGGTCTTTCCTGTCAGAGTCTTGACAAAGATCTGCAT 39382
>seq65811
Length=66007
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| ||||| | | ||| | || || || ||||||||||| ||||| || |||
Sbjct 55006 ATACCTCCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCG 55065
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || || | || || || ||| | ||||||| ||||||||| ||
Sbjct 55066 GCCAAGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGT 55125
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||||||||| || ||||||||||| || | || | || | ||||||||| |||
Sbjct 55126 GGAATGCCTTCCTTGTCTTGAATTTTAGCCTTTA-CGTTGTCGATGGTGTCGGAGCTCTC 55184
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||||| || | || || ||||| | || || ||||| ||||||||
Sbjct 55185 AACTTCGAGCGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 55235
Score = 96.9 bits (106), Expect = 3e-15
Identities = 146/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || || |||||||| || || ||||| | |||| | || || | ||
Sbjct 55261 TGGAGGGTAGACTCCTTTTGAATGTTGTAATCCGCAAGGGTTCTGCCGTCCTCGAGCTGC 55320
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||| || | |||| | ||||||||| || ||||| || || ||||| || || |||
Sbjct 55321 TTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTT 55380
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||| || | || | ||||||||| ||||||||||||||| | || || |||||
Sbjct 55381 GCCTTGA-CGTTATCGATGGTGTCGGAGCTCTCGACTTCGAGAGTGATGGTCTTTCCGGT 55439
Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341
||||| || || || || ||||||
Sbjct 55440 AAGAGTCTTAACGAAGATCTGCATC 55464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451555140527920
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