Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq72241 143 2e-29 seq42370 140 3e-28 seq73807 138 1e-27 seq65811 113 4e-20 >seq72241 Length=55963 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||||||||| || ||||| || || ||||||||||||||||| |||||| Sbjct 40401 ATCCCCCCACGGAGCCTCAAGACGAGATGAAGAGTAGATTCCTTTTGGATATTGTAATCG 40460 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | || ||||| || || || ||| | || | | ||||| ||||| Sbjct 40461 GCGAGAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGA 40520 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || ||||| ||||| || |||| || | || | || |||||| ||| Sbjct 40521 GGAATTCCCTCCTTATCCTGAATCTTGGCCTTGA-CGTTGTCAATTGTATCGGAACTCTC 40579 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| ||| |||||||| |||||||| ||||| || ||||| Sbjct 40580 AACTTCAAGAGTAATCGTCTTGCCGGTCAGAGTTTTAACAAATATCTGCAT 40630 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || |||||||| || ||||| || ||||| ||||| || ||||| ||||| Sbjct 40173 ATACCCCCTCGAAGCCTCAAGACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCC 40232 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| || || |||| || || || ||| | || | || ||||| || || Sbjct 40233 GCAAGGGTTCTACCGTCTTCCAGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGA 40292 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| |||||||||| | |||| | | || | || | || || ||| || Sbjct 40293 GGAATTCCTTCCTTATCTTGAA-TCTTTGCCTTAACGTTGTCAATAGTATCAGAACTTTC 40351 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||| | |||||||| ||||||||||| ||||||||||||||| Sbjct 40352 CACCTCAAGAGTGATGGTTTTGCCTGTTAGAGTTTTGACAAAAATTTGCATC 40403 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAAT 45186 |||||| ||||| || || || |||||||| || |||||||| ||| | || | | Sbjct 39962 CAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGCT-AGAGTACGACCGT 40020 Query 45187 CGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTAT 45246 | ||||| || || || || | |||| || ||| || ||||| ||||| |||||||||| Sbjct 40021 CTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGGAATCCCTTCTTTAT 40080 Query 45247 CTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 | ||||| ||| |||| || | ||| || ||| || || || ||||||| | Sbjct 40081 CCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCAACCTCAAGAGTAATAG 40140 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || || || || |||||||| ||||| Sbjct 40141 TTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| || | || ||||| || || || ||||| ||||||||||||||| Sbjct 40629 ATACCACCGCGGAGTCTGAGGACAAGATGGAGAGTAGACTCCTTCTGGATATTATAATCG 40688 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| || || | |||||| || ||| | || | || ||||| || || Sbjct 40689 GCGAGGGTTCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGA 40748 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || |||||||| || |||| || | || ||||| |||| Sbjct 40749 GGGATTCCCTCCTTGTCTTGAATCTTAGCCTTGACATTGTCGATTGTATCGGAGCTCTCG 40808 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || |||| || || |||||||| ||||| || || || |||||| Sbjct 40809 ACCTCAAGGGTAATTGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCATC 40859 >seq42370 Length=41228 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| |||||||| || ||||| || || || || ||||| ||||| |||||| Sbjct 10207 ATCCCACCGCGAAGCCTCAAGACGAGATGAAGGGTCGACTCTTTTTGAATATTGTAATCG 10148 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| |||||||| || || || | || | | |||||||||||| Sbjct 10147 GCAAGAGTCCGGCCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGA 10088 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| ||||| |||||||| |||| || | || | ||||||||| ||| Sbjct 10087 GGGATCCCTTCCTTATCCTGAATTTTAGCCTTGA-CGTTGTCAATAGTGTCGGAACTCTC 10029 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||||| ||| || |||||||| ||||| ||||| || ||||| Sbjct 10028 AACCTCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTAACAAATATCTGCAT 9978 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| |||||||| || ||||| || || || ||||| ||||| || ||||| Sbjct 10435 ATCCCACCGCGAAGCCTCAAGACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCA 10376 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| || ||| ||||| || ||||| || | |||| || ||||| ||||| Sbjct 10375 GCCAAGGTTCTACCATCCTCCAACTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGA 10316 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || |||||||||| | || | | | || | || | || || ||| ||| Sbjct 10315 GGAATCCCCTCCTTATCTTGAA-TCTTCGCCTTAACGTTATCAATTGTATCAGAACTCTC 10257 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || | |||| ||| || || || |||||||| ||||| ||||||||| Sbjct 10256 GACCTCCAAGGTAATCGTCTTACCAGTCAGAGTTTTAACAAAGATTTGCATC 10205 Score = 111 bits (122), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAAT 45186 || ||| ||||| || || || |||||||| || |||||||| ||| | ||| | || Sbjct 10646 CAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGCT-AGAGTTCTGCCAT 10588 Query 45187 CGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTAT 45246 | ||||| || || || || | ||||||| ||||||||||| ||||| ||||| |||| Sbjct 10587 CTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGAATCCCTTCCTTAT 10528 Query 45247 CTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 | ||||| ||| || | || | || || ||| || || || ||||||| | Sbjct 10527 CCTGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTCAACCTCAAGAGTAATGG 10468 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||| || || || || || |||||||| |||||| Sbjct 10467 TTTTACCAGTGAGGGTCTTAACAAAAATCTGCATC 10433 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || ||||||||||| || || ||||||||| Sbjct 9979 ATACCACCACGGAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGTATGTTATAATCG 9920 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| || ||||||||||| || ||| | || | || ||||| ||||| Sbjct 9919 GCTAGGGTTCGGCCGTCCTCCAATTGTTTGCCGGCGAAGATAAGGCGCTGCTGATCCGGA 9860 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || |||||||| || || |||| || | || |||||| ||| Sbjct 9859 GGGATACCCTCCTTATCTTGGATCTTAGCCTTGACATTATCAATAGTATCGGAACTCTCA 9800 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| | || ||||| ||||| ||||| || || || ||||| Sbjct 9799 ACCTCGAGAGTTATGGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 9750 >seq73807 Length=69832 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || |||||||| || ||||| || || || |||||||| || |||||||| Sbjct 39837 ATGCCACCCCGAAGCCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTATAATCT 39896 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| |||||| || || | ||||||| ||||| || || Sbjct 39897 GCAAGGGTACGACCATCCTCCAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGG 39956 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || |||||||||||| ||||| || | ||||| ||| ||| Sbjct 39957 GGAATTCCTTCCTTGTCTTGAATTTTTGCTTTGACATTATCAATAGTGTCAGAACTCTCT 40016 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||||||||| | || ||||| || || || || ||||| || |||||| Sbjct 40017 ACTTCGAGAGTTATTGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCATC 40067 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| | |||||| ||||| ||||||||||| |||||||| | || || ||| Sbjct 38942 CAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGCAAGTGTCCTACCATC 39001 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | ||||| || || |||||| || |||||||| || |||||||||||||| || Sbjct 39002 CTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 39061 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 ||||| | || | | | || | || | || || || || ||||| || ||||| | Sbjct 39062 TTGAA-TCTTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCTACTTCTAGGGTAACGG 39120 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || ||||| || ||||| || |||||| Sbjct 39121 TCTTCCCAGTAAGAGTCTTGACAAAGATCTGCATC 39155 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| ||||| || || || || || || |||||||||||||| || || Sbjct 39153 ATCCCACCACGGAGTCTCAAGACAAGGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCT 39212 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | |||||| ||||| | ||||| ||||||||||| || Sbjct 39213 GCCAGGGTACGGCCATCCTCAAGTTGTTTCCCTGCAAAAATCAAGCGTTGCTGGTCTGGG 39272 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || |||| |||| | || | || | || | ||||| || || Sbjct 39273 GGAATTCCCTCCTTGTCCTGAA-TTTTGGCTTTAACGTTGTCAATTGTGTCTGAGCTTTC 39331 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| || || || || ||||| || ||||| || ||||| Sbjct 39332 AACTTCAAGGGTAATGGTCTTTCCTGTCAGAGTCTTGACAAAGATCTGCAT 39382 >seq65811 Length=66007 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | ||| | || || || ||||||||||| ||||| || ||| Sbjct 55006 ATACCTCCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCG 55065 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | ||||||| ||||||||| || Sbjct 55066 GCCAAGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGT 55125 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || ||||||||||| || | || | || | ||||||||| ||| Sbjct 55126 GGAATGCCTTCCTTGTCTTGAATTTTAGCCTTTA-CGTTGTCGATGGTGTCGGAGCTCTC 55184 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || | || || ||||| | || || ||||| |||||||| Sbjct 55185 AACTTCGAGCGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 55235 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || |||||||| || || ||||| | |||| | || || | || Sbjct 55261 TGGAGGGTAGACTCCTTTTGAATGTTGTAATCCGCAAGGGTTCTGCCGTCCTCGAGCTGC 55320 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | |||| | ||||||||| || ||||| || || ||||| || || ||| Sbjct 55321 TTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTT 55380 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | ||||||||| ||||||||||||||| | || || ||||| Sbjct 55381 GCCTTGA-CGTTATCGATGGTGTCGGAGCTCTCGACTTCGAGAGTGATGGTCTTTCCGGT 55439 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || || || || |||||| Sbjct 55440 AAGAGTCTTAACGAAGATCTGCATC 55464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451555140527920