Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq35021 113 6e-20 seq39070 93.3 5e-14 >seq35021 Length=73443 Score = 113 bits (124), Expect = 6e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||||||||| ||||| |||||||| | || ||||||||| || || ||||| || || Sbjct 66065 GTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGTCCGGGCATAAGGCC 66124 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || ||||| ||||| || ||||| ||||| || ||||| || || || || ||||| Sbjct 66125 ACGTTTCTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAAAATATTCCTTCGACACA 66184 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 ||||| || | || ||| ||||||||||| Sbjct 66185 AGCGAAGGCGACTATACGTTCGGCAAAGGA 66214 >seq39070 Length=11651 Score = 93.3 bits (102), Expect = 5e-14 Identities = 182/265 (69%), Gaps = 13/265 (5%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 ||||| || || || || || || | || ||||||||| | || ||||| || ||| Sbjct 7919 TGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTTAATCCGGGCATAAGCCCC 7860 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 || ||||| | ||| || ||||||||||| || ||||| || || ||||| ||||| Sbjct 7859 CGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATTCCCTCAACACAA 7800 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGA--GCGGGACTTTGTATCAAACCACTTCATCG 127709 || || || | | |||||| |||||||| || | | | | ||| ||| | | | Sbjct 7799 GCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATCG-ATCCAACGA----AGTG 7745 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG---TTCCT 127766 |||| | ||||| || || | ||| || | ||||| ||||| |||||| | || Sbjct 7744 CCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACGAAAGAGCCTATGCT 7685 Query 127767 TCTTTTCTGATGGATCTTTGATGTA 127791 ||| ||||| ||| || ||||| Sbjct 7684 TCTCGTCTGA---ATCCTTTATGTA 7663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612899045650320