Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq35021 113 6e-20
seq39070 93.3 5e-14
>seq35021
Length=73443
Score = 113 bits (124), Expect = 6e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
||||||||| ||||| |||||||| | || ||||||||| || || ||||| || ||
Sbjct 66065 GTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGTCCGGGCATAAGGCC 66124
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|| ||||| ||||| || ||||| ||||| || ||||| || || || || |||||
Sbjct 66125 ACGTTTCTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAAAATATTCCTTCGACACA 66184
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGA 127680
||||| || | || ||| |||||||||||
Sbjct 66185 AGCGAAGGCGACTATACGTTCGGCAAAGGA 66214
>seq39070
Length=11651
Score = 93.3 bits (102), Expect = 5e-14
Identities = 182/265 (69%), Gaps = 13/265 (5%)
Strand=Plus/Minus
Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591
||||| || || || || || || | || ||||||||| | || ||||| || |||
Sbjct 7919 TGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTTAATCCGGGCATAAGCCCC 7860
Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651
|| ||||| | ||| || ||||||||||| || ||||| || || ||||| |||||
Sbjct 7859 CGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATTCCCTCAACACAA 7800
Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGA--GCGGGACTTTGTATCAAACCACTTCATCG 127709
|| || || | | |||||| |||||||| || | | | | ||| ||| | | |
Sbjct 7799 GCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATCG-ATCCAACGA----AGTG 7745
Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG---TTCCT 127766
|||| | ||||| || || | ||| || | ||||| ||||| |||||| | ||
Sbjct 7744 CCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACGAAAGAGCCTATGCT 7685
Query 127767 TCTTTTCTGATGGATCTTTGATGTA 127791
||| ||||| ||| || |||||
Sbjct 7684 TCTCGTCTGA---ATCCTTTATGTA 7663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 612899045650320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |