Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq39070 113 7e-20 >seq39070 Length=11651 Score = 113 bits (124), Expect = 7e-20 Identities = 293/441 (66%), Gaps = 7/441 (2%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 ||||||| || || || ||||| |||| || || | ||||| | |||| |||| Sbjct 8206 TCTTCTCAAAGAAATTAGTCTTCCCCTGCAAACTAATCAACTCCATCCAATCGAACGGGT 8147 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 ||| || | ||| || | |||| | ||| ||||||| |||||||| ||||||| Sbjct 8146 TCTGAACATCATACATTTTTCCATATCCCAAAGCTCCCAGCAATCTGTCTGCAACAAATT 8087 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 | ||||| | ||| | || | ||| ||||||| ||| | ||| || || || Sbjct 8086 CAATGTACTGGCTCATTAGGTCTCCGTTCATCCCCACCAGTGCACAGGGTAGGGCGTCAC 8027 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 ||| |||||||||||||| || || || || | || || | || | ||| | | Sbjct 8026 ACACGAACTCCTTCTCAATATCCACTGCATCAGCAACGATTCCCCTGATTCTTTCCTCGC 7967 Query 159888 CCGGC-TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 | || ||| || | | | | | | || | ||| |||||||| || || || || Sbjct 7966 TCAGCTTTGACCGCA--GCAGAC--TGTAGAGTAAGCAGGCAAAGTCACAATGGAGGCCT 7911 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 || || ||||| || |||||||| || | | | | || ||||| | ||| || || Sbjct 7910 TCATCTCGAGAAATTAACTCGTTCGAGAAGGTTAATCCGGGCATAAGCCCCCGTTTCTTT 7851 Query 160007 AGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGC 160065 |||||||| || | | ||||| | || | | ||||| || ||||| || ||||| || Sbjct 7850 AGCCAAAATATCG-CACAAAAACTCCCCGAGAAAAATATTCCCTCAACACAAGCAAAGGC 7792 Query 160066 CACGAGCCTCTCACCAAAAGA 160086 |||| | |||| |||| || Sbjct 7791 GACGACACGCTCAGCAAAGGA 7771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794366982529120