Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq39070 113 7e-20
>seq39070
Length=11651
Score = 113 bits (124), Expect = 7e-20
Identities = 293/441 (66%), Gaps = 7/441 (2%)
Strand=Plus/Minus
Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707
||||||| || || || ||||| |||| || || | ||||| | |||| ||||
Sbjct 8206 TCTTCTCAAAGAAATTAGTCTTCCCCTGCAAACTAATCAACTCCATCCAATCGAACGGGT 8147
Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767
||| || | ||| || | |||| | ||| ||||||| |||||||| |||||||
Sbjct 8146 TCTGAACATCATACATTTTTCCATATCCCAAAGCTCCCAGCAATCTGTCTGCAACAAATT 8087
Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827
| ||||| | ||| | || | ||| ||||||| ||| | ||| || || ||
Sbjct 8086 CAATGTACTGGCTCATTAGGTCTCCGTTCATCCCCACCAGTGCACAGGGTAGGGCGTCAC 8027
Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887
||| |||||||||||||| || || || || | || || | || | ||| | |
Sbjct 8026 ACACGAACTCCTTCTCAATATCCACTGCATCAGCAACGATTCCCCTGATTCTTTCCTCGC 7967
Query 159888 CCGGC-TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946
| || ||| || | | | | | | || | ||| |||||||| || || || ||
Sbjct 7966 TCAGCTTTGACCGCA--GCAGAC--TGTAGAGTAAGCAGGCAAAGTCACAATGGAGGCCT 7911
Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006
|| || ||||| || |||||||| || | | | | || ||||| | ||| || ||
Sbjct 7910 TCATCTCGAGAAATTAACTCGTTCGAGAAGGTTAATCCGGGCATAAGCCCCCGTTTCTTT 7851
Query 160007 AGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGC 160065
|||||||| || | | ||||| | || | | ||||| || ||||| || ||||| ||
Sbjct 7850 AGCCAAAATATCG-CACAAAAACTCCCCGAGAAAAATATTCCCTCAACACAAGCAAAGGC 7792
Query 160066 CACGAGCCTCTCACCAAAAGA 160086
|||| | |||| |||| ||
Sbjct 7791 GACGACACGCTCAGCAAAGGA 7771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794366982529120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |