Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq73807 93.3 3e-14
>seq73807
Length=69832
Score = 93.3 bits (102), Expect = 3e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| ||||| ||||| || || |||| || |||| || | ||||||||| |||||
Sbjct 39192 TCCTTTTGGATATTGTAGTCTGCCAGGGTACGGCCATCCTCAAGTTGTTTCCCTGCAAAA 39251
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| || || ||||| || | ||| | || || ||||| ||||| ||||| |||
Sbjct 39252 ATCAAGCGTTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATTTTGGCTTTAA-CGTT 39310
Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707
| | | |||||||| |||||| || || | ||||| || || || || | ||| || ||
Sbjct 39311 GTCAATTGTGTCTGAGCTTTCAACTTCAAGGGTAATGGTCTTTCCTGTCAGAGTCTTGAC 39370
Query 39708 GAAGATCTGCATG 39720
||||||||||||
Sbjct 39371 AAAGATCTGCATG 39383
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || | |||||||| |||||||||| ||| || ||||| || |||||||| ||
Sbjct 38927 GCCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGC 38986
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
| | |||| || | ||||| ||| |||| || | ||||||||| || | |||
Sbjct 38987 AAGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGG 39046
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671
| |||||||||||| || || |||| | | | || || | |||||| ||
Sbjct 39047 AATGCCTTCTTTGTCTTGAATCTTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCTAC 39106
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | |||| || || || || | ||| || || |||||||||||
Sbjct 39107 TTCTAGGGTAACGGTCTTCCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347033869669766
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |