Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq36876 141 1e-28 seq39070 111 2e-19 seq25908 111 2e-19 seq74098 102 1e-16 >seq36876 Length=11444 Score = 141 bits (156), Expect = 1e-28 Identities = 240/339 (71%), Gaps = 14/339 (4%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| ||||| | ||||| ||||| || || |||| |||||| |||||| || ||| Sbjct 9918 TCAAGAATATCTGCACGATTGGTTGCTGCAATTACAATAATACCAGTGTTTCCTT--CAA 9975 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | |||||||| ||||||| |||||||| | ||||||||||| ||||||||| || Sbjct 9976 ACCCATCCATTTCTGTCAGGAGCTGGTTGAGAGTTTGTTCCCTTTCATCATTTCCT---C 10032 Query 16036 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 |||| |||| | | ||| | || || |||||||| ||||||| || || |||| Sbjct 10033 CACCAATTCCAGTTCCTCTTTGTCTCCCAACAGCATCAATTTCATCAACAAATACAATGC 10092 Query 16093 ATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 | || ||| | | | | ||| ||| ||||| || ||||| || || |||||| Sbjct 10093 AGGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGGACACGAGAAGCACCAACACCA 10151 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | | | ||| |||| || || || || | |||||| Sbjct 10152 ACAAACATCTCAACAAATTCAGAACCAGAA-ATTGAGAAAAAAGGAACCCCTGCTTCACC 10210 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| || || || | ||||| || |||||||| Sbjct 10211 AGCAATTGCCTTAGCCAGCAATGTCTTTCCTGTACCTGG 10249 >seq39070 Length=11651 Score = 111 bits (122), Expect = 2e-19 Identities = 171/242 (71%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 102082 AGAAGCA---GCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATT 102138 ||||||| ||||||| || || | || |||| ||| || ||||||| || ||| Sbjct 7682 AGAAGCATAGGCTCTTTCGTGCGATTGAGACCATTCCTTGTGTTGAAAAGAAGGCCAATT 7741 Query 102139 GGGCTATGAAGTGGTTTGATACAAAG-TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTT 102197 |||| | | ||| ||| | | ||| |||||||||||||| || |||| ||| Sbjct 7742 GGGCACT----TCGTTGGATCGATGGCTCGGAATCCTTTGCTGAGCGTGTCGTCGCCTTT 7797 Query 102198 GCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAG 102257 || ||||||||||| || || ||||| || || || || || | |||||| ||||| Sbjct 7798 GCTTGTGTTGAGGGAATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGCTAAAGAAA 7857 Query 102258 CGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTC 102317 || || || ||||| || | |||||| |||||| | || ||||| || || || ||| Sbjct 7858 CGGGGGCTTATGCCCGGATTAACCTTCTCGAACGAGTTAATTTCTCGAGATGAAGGCCTC 7917 Query 102318 CA 102319 || Sbjct 7918 CA 7919 >seq25908 Length=45223 Score = 111 bits (122), Expect = 2e-19 Identities = 252/376 (67%), Gaps = 16/376 (4%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| || || |||||||| |||||||||||||| | ||||| || | Sbjct 41206 AAGCCATCCATTTCAGTTAAAAGCTGATTAATAGTTTGTTCTCTCTCATCGTTTCC---- 41261 Query 16035 ATACCACCA-GCACTGCGT-----TGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 ||| ||| || |||| ||| |||| || ||||||||||||||||| || || Sbjct 41262 --ACCTCCAAGCCCTGCTCCTCTCTGCCTTCCAACTGCATCAATCTCATCAATAAAAACA 41319 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCA 16146 ||||| || || | ||| ||||| | ||||| ||| || | || |||| Sbjct 41320 ATGCAAGGAGCCTTGGCCTTAGCCTTCTCAAACAAATCCCT--CACTCTAGAAGCTCCCA 41377 Query 16147 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 16206 |||||||||||| ||| ||||| | || || | |||| | ||| || || || | Sbjct 41378 CACCAACAAACAACTCAACAAACTCTGAAGCTGCACATGAAAAGAATGGCACGCCAGCCT 41437 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 16266 |||| |||| |||| || | ||| ||||| || ||||| || || | || || Sbjct 41438 CACCAGCAACTGCTCTAGCTAAAAGGGTCTTCCCTGTACCAGGTGGTCCGACCAGAAGAC 41497 Query 16267 CACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 16326 ||| ||||||||| || || | |||| | ||||| | || | ||||| | Sbjct 41498 AGCCTTTTGGAATCTTTGCACCCAAAGCCGTGTATTTATCAGGGTTTTTCAAGAAATCAA 41557 Query 16327 CAATCTCTTCCAATTC 16342 | | |||| |||||| Sbjct 41558 CCACTTCTTGCAATTC 41573 >seq74098 Length=90568 Score = 102 bits (112), Expect = 1e-16 Identities = 177/251 (71%), Gaps = 10/251 (4%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCA 15974 ||| || |||||| | ||| ||||| || | ||||| || || |||||| | Sbjct 3603 ATCTAGAATATCAGGTCTATTGGTTGCAGCAAGGACAATAACTCCAGTGTTTCC--AGTG 3546 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GG 16033 ||||||||||| ||||||| ||||||||||| ||||| || | ||||||||| || Sbjct 3545 AAACCATCCATTTCTGTCAGAAGCTGGTTAAGTGTTTGCTCTCTTTCATCATTTCCTCCA 3486 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | || ||||| || | ||| | || || |||||||||||||| || ||||| | || Sbjct 3485 CCTA-TACCAGTACCTCTCTGCCTCCCAACTGCATCAATCTCATCGATAAAGACTAAACA 3427 Query 16094 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC--ACACCA 16151 ||| |||||| ||| | || | ||| | | || |||| ||||| || ||| Sbjct 3426 TGGCGAATTTTCTTTAGCCTTGTTGAACAAATCTCTT--ACTCTTGACGCCCCAACTCCA 3369 Query 16152 ACAAACATCTC 16162 || |||||||| Sbjct 3368 ACGAACATCTC 3358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620127073577440