Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq39070 122 1e-22
seq25908 86.0 7e-12
>seq39070
Length=11651
Score = 122 bits (134), Expect = 1e-22
Identities = 150/203 (74%), Gaps = 4/203 (2%)
Strand=Plus/Minus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || ||| || |||||||| ||||| || | ||| || |||| | |||
Sbjct 7932 GGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTTAATCC 7873
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
||||| || || | ||||||||||||||| || ||||||||||| || || || || ||
Sbjct 7872 GGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATAT 7813
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGT--CGAGACTTGTCGAAC 119672
||||| ||||| || || |||| | |||||||||||| | | |||| | |||| |
Sbjct 7812 TCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCC--ATCGATC 7755
Query 119673 CACTTGAGAGCCCAGTTGGCCTT 119695
|| || ||||| ||||||||
Sbjct 7754 CAACGAAGTGCCCAATTGGCCTT 7732
>seq25908
Length=45223
Score = 86.0 bits (94), Expect = 7e-12
Identities = 210/316 (66%), Gaps = 2/316 (1%)
Strand=Plus/Plus
Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG-AGG 11650
||| || |||||||| || | |||||| || || || ||||| | ||||||||| |
Sbjct 41205 GAAGCCATCCATTTCAGTTAAAAGCTGATTAATAGTTTGTTCTCTCTCATCGTTTCCACC 41264
Query 11651 GCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710
| | | ||||| | || | | || || || ||||||||||| || || || || |
Sbjct 41265 TCCAAGC-CCTGCTCCTCTCTGCCTTCCAACTGCATCAATCTCATCAATAAAAACAATGC 41323
Query 11711 ACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTA 11770
| || ||||| |||| || || | || | || | ||||| ||||| |
Sbjct 41324 AAGGAGCCTTGGCCTTAGCCTTCTCAAACAAATCCCTCACTCTAGAAGCTCCCACACCAA 41383
Query 11771 CGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAG 11830
| |||| |||||| || | || || | ||| || ||| || || || ||||||||
Sbjct 41384 CAAACAACTCAACAAACTCTGAAGCTGCACATGAAAAGAATGGCACGCCAGCCTCACCAG 41443
Query 11831 CGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCAC 11890
| | |||| ||| | || ||||| || |||||||||| || | ||||| |||
Sbjct 41444 CAACTGCTCTAGCTAAAAGGGTCTTCCCTGTACCAGGTGGTCCGACCAGAAGACAGCCTT 41503
Query 11891 GGGGGATCTTGGCACC 11906
|| ||||| |||||
Sbjct 41504 TTGGAATCTTTGCACC 41519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588392162815600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |