Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq39070 122 1e-22 seq25908 86.0 7e-12 >seq39070 Length=11651 Score = 122 bits (134), Expect = 1e-22 Identities = 150/203 (74%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||| || |||||||| ||||| || | ||| || |||| | ||| Sbjct 7932 GGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTTAATCC 7873 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||| || || | ||||||||||||||| || ||||||||||| || || || || || Sbjct 7872 GGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATAT 7813 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGT--CGAGACTTGTCGAAC 119672 ||||| ||||| || || |||| | |||||||||||| | | |||| | |||| | Sbjct 7812 TCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCC--ATCGATC 7755 Query 119673 CACTTGAGAGCCCAGTTGGCCTT 119695 || || ||||| |||||||| Sbjct 7754 CAACGAAGTGCCCAATTGGCCTT 7732 >seq25908 Length=45223 Score = 86.0 bits (94), Expect = 7e-12 Identities = 210/316 (66%), Gaps = 2/316 (1%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG-AGG 11650 ||| || |||||||| || | |||||| || || || ||||| | ||||||||| | Sbjct 41205 GAAGCCATCCATTTCAGTTAAAAGCTGATTAATAGTTTGTTCTCTCTCATCGTTTCCACC 41264 Query 11651 GCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710 | | | ||||| | || | | || || || ||||||||||| || || || || | Sbjct 41265 TCCAAGC-CCTGCTCCTCTCTGCCTTCCAACTGCATCAATCTCATCAATAAAAACAATGC 41323 Query 11711 ACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTA 11770 | || ||||| |||| || || | || | || | ||||| ||||| | Sbjct 41324 AAGGAGCCTTGGCCTTAGCCTTCTCAAACAAATCCCTCACTCTAGAAGCTCCCACACCAA 41383 Query 11771 CGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAG 11830 | |||| |||||| || | || || | ||| || ||| || || || |||||||| Sbjct 41384 CAAACAACTCAACAAACTCTGAAGCTGCACATGAAAAGAATGGCACGCCAGCCTCACCAG 41443 Query 11831 CGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCAC 11890 | | |||| ||| | || ||||| || |||||||||| || | ||||| ||| Sbjct 41444 CAACTGCTCTAGCTAAAAGGGTCTTCCCTGTACCAGGTGGTCCGACCAGAAGACAGCCTT 41503 Query 11891 GGGGGATCTTGGCACC 11906 || ||||| ||||| Sbjct 41504 TTGGAATCTTTGCACC 41519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588392162815600