Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq36876 129 7e-25 seq25908 104 3e-17 seq74098 95.1 1e-14 seq72016 86.0 7e-12 >seq36876 Length=11444 Score = 129 bits (142), Expect = 7e-25 Identities = 235/338 (70%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 ||||| ||||| | ||||| || || || || |||| |||||| |||||| || ||| Sbjct 9918 TCAAGAATATCTGCACGATTGGTTGCTGCAATTACAATAATACCAGTGTTTCCTT--CAA 9975 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 | |||||||| ||||||| || ||||| | ||||||||||| ||||||||| || Sbjct 9976 ACCCATCCATTTCTGTCAGGAGCTGGTTGAGAGTTTGTTCCCTTTCATCATTTCCT---C 10032 Query 9343 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 |||| |||| | | ||| | || || |||||||| ||||||| || ||||| | Sbjct 10033 CACCAATTCCAGTTCCTCTTTGTCTCCCAACAGCATCAATTTCATCAACAAATACAATGC 10092 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | || ||| || ||| | | || ||||| || || | || || ||||||| Sbjct 10093 AGGGAGCATTCTCCTTGGCCTTCTTGAAAAGATCACGGACACGAGAAGCACCAACACCAA 10152 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9518 |||||||||| ||||| | | | ||| |||| || || || || | |||||| Sbjct 10153 CAAACATCTCAACAAATTCAGAACCAGAA-ATTGAGAAAAAAGGAACCCCTGCTTCACCA 10211 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||||| || || || | ||||| || |||||||| Sbjct 10212 GCAATTGCCTTAGCCAGCAATGTCTTTCCTGTACCTGG 10249 >seq25908 Length=45223 Score = 104 bits (114), Expect = 3e-17 Identities = 192/281 (68%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || || ||||| || |||||||||||||| | ||||| || | Sbjct 41206 AAGCCATCCATTTCAGTTAAAAGCTGATTAATAGTTTGTTCTCTCTCATCGTTTCC---- 41261 Query 9342 ATACCACCA-GCACTGCGT-----TGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 ||| ||| || |||| ||| |||| || ||||||||||||||||| || ||| Sbjct 41262 --ACCTCCAAGCCCTGCTCCTCTCTGCCTTCCAACTGCATCAATCTCATCAATAAAAACA 41319 Query 9396 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 || || || || | || | ||||| | ||| | || || || |||||| Sbjct 41320 ATGCAAGGAGCCTTGGCCTTAGCCTTCTCAAACAAATCCCTCACTCTAGAAGCTCCCACA 41379 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515 |||||||||| ||| ||||| | || || | |||| | ||| || || || ||| Sbjct 41380 CCAACAAACAACTCAACAAACTCTGAAGCTGCACATGAAAAGAATGGCACGCCAGCCTCA 41439 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || |||| |||| || | ||| ||||| || ||||| || Sbjct 41440 CCAGCAACTGCTCTAGCTAAAAGGGTCTTCCCTGTACCAGG 41480 >seq74098 Length=90568 Score = 95.1 bits (104), Expect = 1e-14 Identities = 173/249 (69%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCA 9281 ||| || |||||| | ||| || || || | ||||| || || |||||| | Sbjct 3603 ATCTAGAATATCAGGTCTATTGGTTGCAGCAAGGACAATAACTCCAGTGTTTCC--AGTG 3546 Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GG 9340 ||||||||||| ||||||| ||| ||||||| ||||| || | ||||||||| || Sbjct 3545 AAACCATCCATTTCTGTCAGAAGCTGGTTAAGTGTTTGCTCTCTTTCATCATTTCCTCCA 3486 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | || ||||| || | ||| | || || |||||||||||||| || ||||| | ||| Sbjct 3485 CCTA-TACCAGTACCTCTCTGCCTCCCAACTGCATCAATCTCATCGATAAAGACTAAACA 3427 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 ||| |||||| || | | || | ||| | || ||| || || || ||||| Sbjct 3426 TGGCGAATTTTCTTTAGCCTTGTTGAACAAATCTCTTACTCTTGACGCCCCAACTCCAAC 3367 Query 9461 AAACATCTC 9469 |||||||| Sbjct 3366 GAACATCTC 3358 >seq72016 Length=67185 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||||||||||||||||| || ||||| ||||||||||| |||||||||||| | || Sbjct 54774 GTGGAGACCCTCATCTCTCGATATAAGCTCATTTGAGAATGTTAGGCCTGGCATCAATCC 54715 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAA 117374 || |||||| | |||| | ||||| || || Sbjct 54714 CCTCTTCTTAAGCCAAAATATAGCACAAAA 54685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589395966782480