Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq56894 217 2e-51 seq69198 183 5e-41 seq72083 172 8e-38 seq65532 158 2e-33 seq66950 132 7e-26 seq74151 129 9e-25 seq71024 122 1e-22 seq73955 120 5e-22 seq26828 114 2e-20 seq77419 89.7 8e-13 seq76328 86.0 9e-12 seq68591 86.0 9e-12 >seq56894 Length=101133 Score = 217 bits (240), Expect = 2e-51 Identities = 254/342 (74%), Gaps = 2/342 (1%) Strand=Plus/Plus Query 215657 GGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTA 215716 |||||| |||||||||| |||||| || || || | ||| | ||||| || | Sbjct 63398 GGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCATGTTGCAGCTGCTACCGCTATT 63457 Query 215717 TTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCT 215776 ||| | | || ||| || |||| || ||| ||||||| |||||| || ||||||||| Sbjct 63458 TTCTTGATCTACCCAATCAGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCT 63517 Query 215777 GGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTC 215836 || || ||||||| |||| |||| |||||||||||||||||||| || |||||| |||| Sbjct 63518 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACTCATTT 63577 Query 215837 CACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCA 215896 ||||||||||| || ||||| | ||||| || | || ||| ||| ||||| ||||| Sbjct 63578 CACATGTTAGGCGTAGCTGGGG--TTCGGCGGCTTCTTATTCAGTGCTATGCATGGTTCC 63635 Query 215897 CTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTAC 215956 | || || ||| | | || || || || || || | |||||| || | |||||| Sbjct 63636 TTGGTAACTTCTAGTTTGATGAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 63695 Query 215957 AAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCA 215998 | ||||| |||||||| ||||| || || |||||||| ||| Sbjct 63696 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCA 63737 >seq69198 Length=26917 Score = 183 bits (202), Expect = 5e-41 Identities = 230/313 (73%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 215717 TTCCTTG-TGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTC 215775 || |||| | || ||| ||||| | || ||| ||| ||| |||||| || |||||||| Sbjct 7115 TTTCTTGATCTACCCAATCGGTTAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTC 7056 Query 215776 TGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATT 215835 ||| || || || | |||| |||| |||||||||||||||||||| || || ||| |||| Sbjct 7055 TGGTACTTTTAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATACACTCATT 6996 Query 215836 CCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTC 215895 ||| ||||| || || ||||| || ||||| || || || ||| | | ||||| ||||| Sbjct 6995 CCA-ATGTTGGGCGTAGCTGGGGTATTCGGCGGCTCCTTATTCAGTTCTATGCATGGTTC 6937 Query 215896 ACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTA 215955 | || || ||| | | |||| || || || || | |||||| || | |||| Sbjct 6936 CTTGGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATCTGCTAATGAAAGTTA 6877 Query 215956 CAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCG 216015 || || || |||||| ||||| || || ||||| |||||||| ||||| ||| | || Sbjct 6876 CAGATTTGGTCAAGAGACAGAAACTTATAATATCGTTGCTGCACATGGTTATTTTAGCCG 6817 Query 216016 CCTCATCTTCCAA 216028 | ||||||||| Sbjct 6816 ATTGATCTTCCAA 6804 >seq72083 Length=18787 Score = 172 bits (190), Expect = 8e-38 Identities = 258/364 (71%), Gaps = 2/364 (1%) Strand=Plus/Plus Query 215918 AGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAA 215977 || || || || || | |||||| || | ||||||| ||| | |||||||| ||| Sbjct 7344 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCAGTCAAGAGGAAGAA 7403 Query 215978 ACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCT 216037 || || || |||||| | || || ||||| ||||| || || ||| ||||||| || | Sbjct 7404 ACTTATAATATCGTACCCGCTCATGGTTATTTTGGACGACTGATCGTCCAATATGCTAAT 7463 Query 216038 TTCAACAACTCA-AGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTG 216096 ||||| || || | || | |||||| || | || || | ||||| | ||||||| Sbjct 7464 TTCAAAAATTCCCATTCGT-TACACTTCATCTTAGCTGCTTAGCCTGTAGTAGGTATCTG 7522 Query 216097 GGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCA 216156 | ||||| | ||| || |||||||| |||||||| ||||||||||| |||||||| Sbjct 7523 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 7582 Query 216157 GTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGC 216216 ||||| || || ||| || ||| ||||||||| || | ||||| | || Sbjct 7583 ATCTGTAGTTGATAGTCAAGGTTGTGTAATTAATACTTGGGCTGATATCATTAACCGTGC 7642 Query 216217 AGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGC 216276 |||||||||||| | ||||| || ||||| ||||| || ||||| ||||| | || Sbjct 7643 TAACCTTGGTATGGAATTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 7702 Query 216277 TGCT 216280 | || Sbjct 7703 TACT 7706 Score = 95.1 bits (104), Expect = 2e-14 Identities = 200/294 (68%), Gaps = 7/294 (2%) Strand=Plus/Plus Query 215321 AATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCT---CGCAGCT 215377 || ||| | ||| |||| ||||||||||| | ||||| || | | | |||| || Sbjct 6655 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCGACCTTATTGACCGCAACT 6714 Query 215378 ACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGA 215437 ||| | ||| || || ||||| ||||| ||||| || ||||| || || || | Sbjct 6715 TCCA--TATTT-ATTACTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 6771 Query 215438 GAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCT 215497 | || || | | |||||| | || || ||||| || || || |||| || | | | Sbjct 6772 GTACCCATTTCATGATCTTTACTTTACGGAAACAATATTATTTC-AGTGCCATTATTCTT 6830 Query 215498 AGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAA 215557 | ||| || || || || ||||| ||||| |||||||||| ||| | ||||| ||| Sbjct 6831 ACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGGGAAGTGGCATCCGTTGATGAA 6890 Query 215558 TGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGT 215611 ||| | || || ||||| |||| |||| || | | |||||| | ||||| Sbjct 6891 TGGTTATATAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGT 6944 >seq65532 Length=34246 Score = 158 bits (174), Expect = 2e-33 Identities = 215/300 (72%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 215981 TACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTC 216040 || || ||||||| || || ||||| ||||| | | ||||||||||| || |||| Sbjct 2941 TATAATATCGTAGGCGCTCATGGTTATTTTGGCCCATTGATCTTCCAATATGCTAGTTTC 3000 Query 216041 AACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCA 216100 ||||| || | | ||||||||||| || || | ||||| | |||||| | Sbjct 3001 AACAATTCCCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTAGTTC 3060 Query 216101 ACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCT 216160 ||||| | ||| || |||||||| |||||||| ||||||||||| |||||||| ||| Sbjct 3061 ACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCT 3120 Query 216161 GTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGA 216220 || || || ||| || ||| ||||||||| || | ||||| | || Sbjct 3121 GTAGTTGATAGTAAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAAC 3180 Query 216221 CTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCT 216280 |||||||||||||| ||||| || ||||| ||||| || ||||| ||||| | |||||| Sbjct 3181 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCT 3240 >seq66950 Length=22296 Score = 132 bits (146), Expect = 7e-26 Identities = 197/278 (71%), Gaps = 1/278 (0%) Strand=Plus/Plus Query 215891 GGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTAC 215950 ||||| | || || ||| | | || || || || || || | |||||| || | Sbjct 3468 GGTTCCTTGGTAACTTCTAGTTTGATTAGGGAAACTACAGAAAATGAATCTGCTAATGAA 3527 Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010 ||||||| ||| | |||||||| ||||| || || |||||||| || || ||||| ||| Sbjct 3528 GGTTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 3587 Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 216070 || || | ||||||||||| || |||||| || || | | ||||||||||| Sbjct 3588 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAAATCCCGTTCATTACACTTCTTCCTA 3647 Query 216071 GCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTC 216130 || || | ||||| | |||||||| ||||| | | | | | |||||||| ||| Sbjct 3648 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGATATAGC-ACTATGGCTTTC 3706 Query 216131 AACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGA 216168 ||||| ||||||||||| |||||| | | ||| || || Sbjct 3707 AACCTAAACGGTTTCAATTTCAACAAATTTGTAGTGGA 3744 >seq74151 Length=15306 Score = 129 bits (142), Expect = 9e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 215733 TCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACA 215792 ||||| | || ||| |||||| ||||| || ||||||||||| || ||||||| || Sbjct 3298 TCGGTTAAGGAAGTTTTTCTGATAGCATGCCTCTAGGAATCTCTGGTACTTTCAACTTCA 3239 Query 215793 TGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGG 215852 || |||| ||||| |||||| ||||||| || |||||||||| ||||| ||||| || | Sbjct 3238 TGATTGTATTCCACGCTGAGTACAACATCCTTTTGCACCCATTTCACATATTAGGCGTAG 3179 Query 215853 CTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTC 215912 ||| || ||||| | || || ||| ||| ||||| |||| | || || ||| | Sbjct 3178 ATGGGGTATTCGGCGACTCCTTATTCAGTGCTATGCATAGTTCCTTGGTAACTTCTAGTA 3119 Query 215913 TAATCAGAGAGACAACTGA 215931 | ||||| || || || || Sbjct 3118 TGATCAGGGAAACCACAGA 3100 >seq71024 Length=48960 Score = 122 bits (134), Expect = 1e-22 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 215758 TATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAA 215817 |||||| || |||| |||||| || ||||||| |||| |||| || |||| |||||| | Sbjct 13703 TATGCCTCTAGGAACCTCTGGTACTTTCAACTTCATGATTGTATTTCAGGTTGAGCATGA 13762 Query 215818 CATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTT 215877 ||| || |||||| |||| |||||||||||||| ||||| || ||||| | || | || Sbjct 13763 CATCCTTATGCACTCATTTCACATGTTAGGTGTAGCTGGGGTATTCGGCAGCTCCATATT 13822 Query 215878 CTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGA 215922 | ||| ||||| ||||| | || || ||| | | ||||| || Sbjct 13823 CAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGA 13867 >seq73955 Length=113899 Score = 120 bits (132), Expect = 5e-22 Identities = 180/253 (71%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 216004 TTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTC-AAGAAGTCTTCACT 216062 ||| ||||| || | ||||||||||| || ||||||||| || || || | |||| Sbjct 50342 TTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCCAATTCGT-TACACT 50284 Query 216063 TCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTA 216122 ||||||| || || | ||||| | ||| |||| ||||| | ||| || |||| Sbjct 50283 TCTTCCTAGCTGCTTGGCCTGTAGTAGGTAACTGGTTCACTGCTTTAGGTATCAGCACTA 50224 Query 216123 TGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAG 216182 |||| |||||||| ||||||||||| |||||||| ||||| || || | | | Sbjct 50223 TGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGATCGTG 50164 Query 216183 TTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACG 216242 | ||| ||||| ||| || | ||||| | || |||||||||||||| ||||| | Sbjct 50163 TAATTAATACTTAGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 50104 Query 216243 AGCGTAACGCTCA 216255 | ||||| |||| Sbjct 50103 AACGTAATACTCA 50091 >seq26828 Length=17835 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 215796 TTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTG 215855 |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || |||| Sbjct 17833 TTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTG 17774 Query 215856 GTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAA 215915 | || ||| | || || || ||| ||| ||||| ||||| | || || ||| | | | Sbjct 17773 GGGTATTCAGCGGCTCCTTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGA 17714 Query 215916 TCAGAGAGACAACTGAGCAAGAATCT 215941 |||| || || || || | |||||| Sbjct 17713 TCAGGGAAACCACAGAAAATGAATCT 17688 >seq77419 Length=2309 Score = 89.7 bits (98), Expect = 8e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 215752 TGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGA 215811 ||||| |||||| || ||||||||||| || ||||||| |||| |||| ||||||||||| Sbjct 2309 TGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGA 2250 Query 215812 GCACAACAT 215820 ||||||||| Sbjct 2249 GCACAACAT 2241 >seq76328 Length=28872 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 215806 GGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGG 215865 |||||||||||||||||| ||||||||||| ||||||||||| || ||||| || ||||| Sbjct 5242 GGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGGGTATTCGG 5183 Query 215866 TGGTTCATTGTT 215877 || || || || Sbjct 5182 CGGCTCCTTATT 5171 >seq68591 Length=37818 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 || || ||||| | || | ||| ||| ||||| ||||| | || || ||| | | Sbjct 5549 GGGGTATTCGGCAGCTCCTAATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 5490 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | |||| | || | ||||||| ||||| ||| |||| Sbjct 5489 ATCAGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGTCAAAAGGAA 5430 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || |||||||| || | | ||| ||||| || | || |||||||| || Sbjct 5429 GAAACTTATAATATCGTAGCCGCTAATGATTATTTTGGCCGATTGATATTCCAATATGCT 5370 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGT 216084 ||||||| | || | | ||||||||||| || || | ||||| Sbjct 5369 AGTTTCAACGATTCCCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGT 5320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744343019236960