Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq65811 131 1e-25 seq73807 104 2e-17 seq53817 87.8 1e-12 seq42370 82.4 5e-11 >seq65811 Length=66007 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| ||| ||||||||||| ||||||| | | | || | || || Sbjct 54799 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCCGTCTTCA 54858 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||||||||| || | | ||||||||| | || | ||||||||||| | Sbjct 54859 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTGA 54918 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||| ||| | || | || | |||||| || | ||| ||||||||| Sbjct 54919 ATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTTT 54978 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||||||||| |||||||| |||||| Sbjct 54979 CCGGTGAGAGTCTTGACAAAGATTTGCATA 55008 Score = 113 bits (124), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | |||||||| | || || || |||||||| || |||| | Sbjct 55237 CCTCCCCTCAAACGGAGGACCAAGTGGAGGGTAGACTCCTTTTGAATGTTGTAATCCGCA 55296 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| ||| | || || ||||| ||||||||||| || || | |||||||||| | || Sbjct 55297 AGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGAGGA 55356 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | |||||||| || ||||| ||||| | ||||||| || | ||| Sbjct 55357 ATTCCCTCCTTATCCTGGATCTTTGCCTTGAC----GTTATCGATGGTGTCGGAGCTCTC 55412 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||| || ||||| ||||| || |||||||| || ||||||||||| Sbjct 55413 GACTTCGAGAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 55463 >seq73807 Length=69832 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | ||| ||||| || | || || || || |||||||| || | | Sbjct 38928 CCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGCA 38987 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | |||| || |||||||| ||||||||||| || || |||||||| | || Sbjct 38988 AGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGGA 39047 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| |||||| || ||| | |||| ||| | || || Sbjct 39048 ATGCCTTCTTTGTCTTGAATCTTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCTACT 39107 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| | ||| || || || |||||||| |||||||||||||| Sbjct 39108 TCTAGGGTAACGGTCTTCCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| || | ||||| |||| || || || || || ||||| | ||| | || || Sbjct 39168 CTCAAGACAAGGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCTGCCAGGGTACGGCCA 39227 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || || ||||| || ||||| || | |||||||||||| | || | ||||||||| Sbjct 39228 TCCTCAAGTTGTTTCCCTGCAAAAATCAAGCGTTGCTGGTCTGGGGGAATTCCCTCCTTG 39287 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||| || ||| ||| | || | || | ||||| || | ||| ||| Sbjct 39288 TCCTGAATTTTGGCTTTAACGTTGTCAATTGTGTCTGAGCTTTCAACTTCAAGGGTAATG 39347 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || |||||||| |||||||||||||| Sbjct 39348 GTCTTTCCTGTCAGAGTCTTGACAAAGATCTGCAT 39382 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||| | ||||| ||| || || ||||| || ||||| | |||| | || |||| Sbjct 39398 CAAAACAAGGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCTGCAAGGGTACGGCCATC 39457 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || |||||||| || ||||| || | |||||||| || | || | ||||||||||| Sbjct 39458 CTCAAGCTGTTTCCCAGCAAAAATCAAACGTTGCTGATCAGGGGGAATTCCCTCCTTGTC 39517 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||| || |||||| | || | || | || || || | ||| ||||| Sbjct 39518 CTGAATTTTGGCTTTGACATTGTCAATTGTGTCTGAGCTTTCGACTTCCAGGGTGATGGT 39577 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || || ||||| || ||||| ||||| Sbjct 39578 CTTTCCTGTCAGGGTCTTAACGAAGATTTGCAT 39610 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||| | |||||| || | || | ||| || || || |||||||| || | | Sbjct 39840 CCACCCCGAAGCCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTATAATCTGCA 39899 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| ||||| ||||| || ||||| || | || ||||| || | || Sbjct 39900 AGGGTACGACCATCCTCCAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGGGGA 39959 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | || |||||||| ||| || |||||| || |||| || ||| ||| Sbjct 39960 ATTCCTTCCTTGTCTTGAATTTTTGCTTTGAC--AT--TATCAATAGTGTCAGAACTCTC 40015 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||| ||||| || || || ||||| ||||| |||||||||||||| Sbjct 40016 TACTTCGAGAGTTATTGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 40066 >seq53817 Length=15024 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||| ||| ||||| ||||| ||||| | || ||| | || || Sbjct 3647 AACAAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTTCTGCCGTCTTC 3706 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || ||||| || || || || |||||||| | || | ||||||||||| Sbjct 3707 GAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 3766 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || ||||| | || | || || || || || | ||| ||||| || Sbjct 3767 AATTTTGGCCTTGACATTGTCAATGGTATCCGAGGATTCGACCTCAAGGGTGATGGTCTT 3826 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||| || ||||| ||||||||||| || Sbjct 3827 CCCCGTGAGGGTTTTCACGAAGATCTGCATTTT 3859 >seq42370 Length=41228 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| |||||||| || | ||| |||| | || |||| ||||| ||||| || Sbjct 9941 TTCCTTCTGTATGTTATAATCGGCTAGGGTTCGGCCGTCCTCCAATTGTTTGCCGGCGAA 9882 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| || | || | |||||||| || ||||| ||||| | Sbjct 9881 GATAAGGCGCTGCTGATCCGGAGGGATACCCTCCTTATCTTGGATCTTAGCCTTGAC--A 9824 Query 34910 TGCTATCGATTC-ACCGGC---CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | |||| || | ||| |||||| |||| |||||||| || || || || || | Sbjct 9823 T--TATCAATAGTATCGGAACTCTCAACCTCGAGAGTTATGGTCTTGCCTGTTAGGGTTT 9766 Query 34966 TCACAAAGATCTGCAT 34981 |||| ||||||||||| Sbjct 9765 TCACGAAGATCTGCAT 9750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324319843857456