Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq67281 93.3 5e-14 seq50219 93.3 5e-14 seq42762 93.3 5e-14 seq40763 93.3 5e-14 >seq67281 Length=7088 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||||||||| | ||| | ||||| | || | || | || |||||| ||||| || Sbjct 7044 ACCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCC 6985 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | ||||| ||||| ||| ||||||||| | || | || || || || Sbjct 6984 ATTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGA 6925 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | || || || || || ||| || | |||||| |||||||||||||| || Sbjct 6924 TACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATAT 6865 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 ||| || || || |||||| |||| Sbjct 6864 TCCCTCAATGCTGTCATCTTTCAT 6841 >seq50219 Length=1725 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||||||||| | ||| | ||||| | || | || | || |||||| ||||| || Sbjct 1202 ACCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCC 1261 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | ||||| ||||| ||| ||||||||| | || | || || || || Sbjct 1262 ATTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGA 1321 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | || || || || || ||| || | |||||| |||||||||||||| || Sbjct 1322 TACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATAT 1381 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 ||| || || || |||||| |||| Sbjct 1382 TCCCTCAATGCTGTCATCTTTCAT 1405 >seq42762 Length=1633 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||||||||| | ||| | ||||| | || | || | || |||||| ||||| || Sbjct 1110 ACCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCC 1169 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | ||||| ||||| ||| ||||||||| | || | || || || || Sbjct 1170 ATTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGA 1229 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | || || || || || ||| || | |||||| |||||||||||||| || Sbjct 1230 TACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATAT 1289 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 ||| || || || |||||| |||| Sbjct 1290 TCCCTCAATGCTGTCATCTTTCAT 1313 >seq40763 Length=101153 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||||||||| | ||| | ||||| | || | || | || |||||| ||||| || Sbjct 101109 ACCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCC 101050 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | ||||| ||||| ||| ||||||||| | || | || || || || Sbjct 101049 ATTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGA 100990 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | || || || || || ||| || | |||||| |||||||||||||| || Sbjct 100989 TACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATAT 100930 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 ||| || || || |||||| |||| Sbjct 100929 TCCCTCAATGCTGTCATCTTTCAT 100906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561551595599280