Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq65532 178 4e-40
seq72083 159 1e-34
seq56894 150 5e-32
seq69198 136 1e-27
seq73955 132 1e-26
seq26852 109 2e-19
seq56815 104 7e-18
seq71024 102 2e-17
seq74151 100 8e-17
>seq65532
Length=34246
Score = 178 bits (196), Expect = 4e-40
Identities = 217/296 (73%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 26489 TATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTT 26548
|||||||| || | || || || || ||||| ||| || || || ||||| |||||
Sbjct 2941 TATAATATCGTAGGCGCTCATGGTTATTTTGGCCCATTGATCTTCCAATATGCTAGTTTC 3000
Query 26549 AATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTG 26608
|| || |||||| | || ||||| || ||| ||||||| || || || || | | |
Sbjct 3001 AACAATTCCCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTAGTTC 3060
Query 26609 ACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCA 26668
|| || | |||||| |||| ||||| || |||||||| ||||| || || ||||| ||
Sbjct 3061 ACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCT 3120
Query 26669 GTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAAC 26728
||||| ||| ||| || |||| ||| ||||||||| | | ||||| ||||||
Sbjct 3121 GTAGTTGATAGTAAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAAC 3180
Query 26729 CTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784
|| || | ||||||||||| || |||||||||||||| || || || ||| ||||
Sbjct 3181 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 3236
>seq72083
Length=18787
Score = 159 bits (176), Expect = 1e-34
Identities = 222/311 (71%), Gaps = 0/311 (0%)
Strand=Plus/Plus
Query 26474 CAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTT 26533
||||| ||||| || |||||||| || | || || || || ||||| || | || |
Sbjct 7392 CAAGAGGAAGAAACTTATAATATCGTACCCGCTCATGGTTATTTTGGACGACTGATCGTC 7451
Query 26534 CAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTT 26593
|| ||||| | ||| || || || ||| | || ||| | | ||| ||| ||| ||
Sbjct 7452 CAATATGCTAATTTCAAAAATTCCCATTCGTTACACTTCATCTTAGCTGCTTAGCCTGTA 7511
Query 26594 GTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTT 26653
|| || || ||| | || || | |||||| |||| ||||| || |||||||| |||||
Sbjct 7512 GTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTC 7571
Query 26654 AACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTA 26713
|| || ||||| || ||||| ||| | | || |||| ||| ||||||||| |
Sbjct 7572 AATTTCAACCAATCTGTAGTTGATAGTCAAGGTTGTGTAATTAATACTTGGGCTGATATC 7631
Query 26714 TTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCA 26773
| ||||| |||||||| || | ||| ||||||| || |||||||||||||| || ||
Sbjct 7632 ATTAACCGTGCTAACCTTGGTATGGAATTTATGCATGAACGTAATGCTCATAATTTCCCT 7691
Query 26774 CTTGACTTAGC 26784
|| ||| ||||
Sbjct 7692 CTAGACCTAGC 7702
Score = 122 bits (134), Expect = 3e-23
Identities = 203/287 (71%), Gaps = 5/287 (2%)
Strand=Plus/Plus
Query 25829 AACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCAGCCACT 25888
|||||||| || | |||||||| || || | ||||| || |||| | | || |||
Sbjct 6655 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCGACCTTATTGACCGCAACT 6714
Query 25889 AC-ATGTTTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGA 25947
| || ||| |||| |||||||| || || || || |||||||| ||||| || ||||
Sbjct 6715 TCCATATTTATTACT-GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGT 6773
Query 25948 GCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTC 26007
|| |||| | || ||| | |||||||||||||| || ||| | || | | | |
Sbjct 6774 ACCCATTTCATGATCTTTACTTTACGGAAACAATATTATTTCA-GTGCCATTATTCTTAC 6832
Query 26008 CTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCA-CACTGGACGAGT 26066
||| || || || | || |||||||| |||||||||| ||||| | | || || |
Sbjct 6833 TTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGGGAAG-TGGCATCCGTTGATGAAT 6891
Query 26067 GGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTA 26113
|| |||| || || || || ||| |||| ||| | | |||||||||
Sbjct 6892 GGTTATATAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTA 6938
Score = 84.2 bits (92), Expect = 6e-12
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281
|| ||||| | || || ||||| ||||| |||||| |||||| |||||||| || |||
Sbjct 7140 GTTTTCTTGATATACCCATTCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 7199
Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATT 26310
||||||||||| ||||| ||| | |||||
Sbjct 7200 TCTGGTACTTTCAACTTCATGATTGTATT 7228
>seq56894
Length=101133
Score = 150 bits (166), Expect = 5e-32
Identities = 243/346 (70%), Gaps = 4/346 (1%)
Strand=Plus/Plus
Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221
|| || ||| |||| ||||| |||||||||| |||| | | | || ||| |||
Sbjct 63395 CTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCATGTTGCAGCTGCTACCGCT 63454
Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281
| ||||| | || || || | ||||| |||||| |||||| |||||||| || |||
Sbjct 63455 ATTTTCTTGATCTACCCAATCAGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 63514
Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341
||||||||||| ||||| ||| | |||||||| || || || || || || |||||| ||
Sbjct 63515 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACTCA 63574
Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTT-TTCGCTGCTATGCACGG 26400
|| || ||| || || ||||||| ||||| || |||| ||| ||||||||| ||
Sbjct 63575 TTTCACATGTTAGGCGTAGCTGGGG--TTCGGCGG-CTTCTTATTCAGTGCTATGCATGG 63631
Query 26401 AAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGG 26460
||||| ||||| | || ||||| ||||| | | || ||| | ||
Sbjct 63632 TTCCTTGGTAACTTCTAGTTTGATGAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 63691
Query 26461 CTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCA 26506
|| | || || ||||| ||||| || |||||||| || || |||
Sbjct 63692 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCA 63737
>seq69198
Length=26917
Score = 136 bits (150), Expect = 1e-27
Identities = 223/320 (70%), Gaps = 1/320 (0%)
Strand=Plus/Minus
Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281
|| ||||| | || || |||| |||| |||||| | |||| |||||||| || |||
Sbjct 7117 GTTTTCTTGATCTACCCAATCGGTTAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATC 7058
Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341
|||||||||||||| || ||| | |||||||| || || || || || || || ||| ||
Sbjct 7057 TCTGGTACTTTTAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATACACTCA 6998
Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGA 26401
||||| ||| || || |||||||| ||||| || | | ||| | ||||||| ||
Sbjct 6997 TTCCA-ATGTTGGGCGTAGCTGGGGTATTCGGCGGCTCCTTATTCAGTTCTATGCATGGT 6939
Query 26402 AGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGC 26461
||||| ||||| | || ||||| ||||| | | || ||| | |
Sbjct 6938 TCCTTGGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATCTGCTAATGAAAGT 6879
Query 26462 TATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 26521
|| | ||||| ||||| ||| || |||||||| || |||||||| || || ||| |
Sbjct 6878 TACAGATTTGGTCAAGAGACAGAAACTTATAATATCGTTGCTGCACATGGTTATTTTAGC 6819
Query 26522 AGATTAATTTTTCAGTATGC 26541
|||| || || || ||||
Sbjct 6818 CGATTGATCTTCCAACATGC 6799
>seq73955
Length=113899
Score = 132 bits (146), Expect = 1e-26
Identities = 184/254 (72%), Gaps = 4/254 (2%)
Strand=Plus/Minus
Query 26513 TACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTC 26572
|| ||||| |||| || || || ||||| ||||| || || | ||| | || |||
Sbjct 50341 TATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCCAATTCGTTACACTTC 50282
Query 26573 TTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATG 26632
|| || ||| ||||||| || || || | ||| | || || | |||||| |||| |||
Sbjct 50281 TTCCTAGCTGCTTGGCCTGTAGTAGGTAACTGGTTCACTGCTTTAGGTATCAGCACTATG 50222
Query 26633 GCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGA- 26690
|| || |||||||| ||||| || || ||||| || ||||| ||| || || || |
Sbjct 50221 GCTTTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA--GATCGTG 50164
Query 26691 TAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACG 26750
|||| ||| | ||||||| | | ||||| |||||||| || | ||||||||||| |
Sbjct 50163 TAATTAATACTTAGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 50104
Query 26751 AGCGTAATGCTCAT 26764
| |||||| |||||
Sbjct 50103 AACGTAATACTCAT 50090
>seq26852
Length=33301
Score = 109 bits (120), Expect = 2e-19
Identities = 253/376 (67%), Gaps = 4/376 (1%)
Strand=Plus/Minus
Query 25906 CTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTT 25965
|||||| | | || || |||||||| ||||| || |||| || ||| || || ||
Sbjct 11381 CTTCATTGTTGTTCCTCCAGTAGATATTGATGGTATTTGTGAACCCATTTTTGGATCTTT 11322
Query 25966 AATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACT 26025
| | ||||||||||||| || ||||| | | | || | |||| || || | |
Sbjct 11321 ACTTCACGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTACAGCTATAAGTTT 11262
Query 26026 ACATTTTTACCCGATCTGGGAAGCTGGCA-CACTGGACGAGTGGCTATACAATGGCGGAC 26084
|| |||||||| || | | |||| |||| | | || || ||| |||| ||||| || |
Sbjct 11261 GCACTTTTACCCAATTTAGAAAGC-GGCATCCATTGATGAATGGTTATATAATGGTGGTC 11203
Query 26085 CATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGT 26144
| ||| |||| ||| | | ||||||||| | || ||||| || ||| |||
Sbjct 11202 CTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATAGGTCATGAGT 11143
Query 26145 GGGAAC-TATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCA 26203
|||| | || ||| | | || || ||| |||| ||||| |||||||||| | || ||
Sbjct 11142 GGGAGCTTAGCTT-CCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCTGCTCCT 11084
Query 26204 CTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGAT 26263
| || ||| | | | ||||| | || || |||| ||||| |||||| ||||
Sbjct 11083 ATTGTAGCTGCTACCACTATTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTATGAT 11024
Query 26264 GGAATGCCTCTTGGTA 26279
|| || || |||||
Sbjct 11023 GGTATACCCTCTGGTA 11008
>seq56815
Length=14128
Score = 104 bits (114), Expect = 7e-18
Identities = 129/174 (74%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 25823 ACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCA 25882
|| || |||||||| || || |||||||| || || | ||||| || |||| | |
Sbjct 3 ACCGAAAACCGTCTTTACGTTGGATGGTTTGGTGTTTTGATGATCCCGACCTTATTGACC 62
Query 25883 GCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCAT 25941
|| ||| | ||| ||| | | |||||||| || || || || |||||||| ||||| ||
Sbjct 63 GCAACTTC-TGTATTTGTTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 121
Query 25942 ACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGC 25995
||||| | ||||| || || ||| | |||||||||||||| || ||||| ||
Sbjct 122 TCGTGAACTTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCAGGTGC 175
>seq71024
Length=48960
Score = 102 bits (112), Expect = 2e-17
Identities = 116/154 (75%), Gaps = 4/154 (3%)
Strand=Plus/Plus
Query 26264 GGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACAT 26323
|| |||||||| || | |||||||||||| ||||| ||| | ||||| || | || |||
Sbjct 13701 GGTATGCCTCTAGGAACCTCTGGTACTTTCAACTTCATGATTGTATTTCAGGTTGAGCAT 13760
Query 26324 AATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTC-- 26381
| || || |||||| |||| || ||| ||||| |||||||| |||| | |||||
Sbjct 13761 GACATCCTTATGCACTCATTTCACATGTTAGGTGTAGCTGGGGTATTCG--GCAGCTCCA 13818
Query 26382 TTTTCGCTGCTATGCACGGAAGTTTGGTTACTTC 26415
| ||| ||||||||| || |||||| |||||
Sbjct 13819 TATTCAGTGCTATGCATGGTTCTTTGGTAACTTC 13852
>seq74151
Length=15306
Score = 100 bits (110), Expect = 8e-17
Identities = 127/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 26241 TCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTA 26300
|||| |||| |||||| |||| | |||||||| || |||||||||||||| ||||| |
Sbjct 3298 TCGGTTAAGGAAGTTTTTCTGATAGCATGCCTCTAGGAATCTCTGGTACTTTCAACTTCA 3239
Query 26301 TGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTG 26360
|| | |||||||| || || | || || || |||||||||| || || || || |
Sbjct 3238 TGATTGTATTCCACGCTGAGTACAACATCCTTTTGCACCCATTTCACATATTAGGCGTAG 3179
Query 26361 CTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTC 26415
|||||| ||||| | | | ||| ||||||||| | ||||| |||||
Sbjct 3178 ATGGGGTATTCGGCGACTCCTTATTCAGTGCTATGCATAGTTCCTTGGTAACTTC 3124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146588226098448
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