Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq65532 178 4e-40 seq72083 159 1e-34 seq56894 150 5e-32 seq69198 136 1e-27 seq73955 132 1e-26 seq26852 109 2e-19 seq56815 104 7e-18 seq71024 102 2e-17 seq74151 100 8e-17 >seq65532 Length=34246 Score = 178 bits (196), Expect = 4e-40 Identities = 217/296 (73%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 26489 TATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTT 26548 |||||||| || | || || || || ||||| ||| || || || ||||| ||||| Sbjct 2941 TATAATATCGTAGGCGCTCATGGTTATTTTGGCCCATTGATCTTCCAATATGCTAGTTTC 3000 Query 26549 AATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTG 26608 || || |||||| | || ||||| || ||| ||||||| || || || || | | | Sbjct 3001 AACAATTCCCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTAGTTC 3060 Query 26609 ACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCA 26668 || || | |||||| |||| ||||| || |||||||| ||||| || || ||||| || Sbjct 3061 ACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCT 3120 Query 26669 GTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAAC 26728 ||||| ||| ||| || |||| ||| ||||||||| | | ||||| |||||| Sbjct 3121 GTAGTTGATAGTAAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAAC 3180 Query 26729 CTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 || || | ||||||||||| || |||||||||||||| || || || ||| |||| Sbjct 3181 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 3236 >seq72083 Length=18787 Score = 159 bits (176), Expect = 1e-34 Identities = 222/311 (71%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 26474 CAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTT 26533 ||||| ||||| || |||||||| || | || || || || ||||| || | || | Sbjct 7392 CAAGAGGAAGAAACTTATAATATCGTACCCGCTCATGGTTATTTTGGACGACTGATCGTC 7451 Query 26534 CAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTT 26593 || ||||| | ||| || || || ||| | || ||| | | ||| ||| ||| || Sbjct 7452 CAATATGCTAATTTCAAAAATTCCCATTCGTTACACTTCATCTTAGCTGCTTAGCCTGTA 7511 Query 26594 GTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTT 26653 || || || ||| | || || | |||||| |||| ||||| || |||||||| ||||| Sbjct 7512 GTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTC 7571 Query 26654 AACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTA 26713 || || ||||| || ||||| ||| | | || |||| ||| ||||||||| | Sbjct 7572 AATTTCAACCAATCTGTAGTTGATAGTCAAGGTTGTGTAATTAATACTTGGGCTGATATC 7631 Query 26714 TTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCA 26773 | ||||| |||||||| || | ||| ||||||| || |||||||||||||| || || Sbjct 7632 ATTAACCGTGCTAACCTTGGTATGGAATTTATGCATGAACGTAATGCTCATAATTTCCCT 7691 Query 26774 CTTGACTTAGC 26784 || ||| |||| Sbjct 7692 CTAGACCTAGC 7702 Score = 122 bits (134), Expect = 3e-23 Identities = 203/287 (71%), Gaps = 5/287 (2%) Strand=Plus/Plus Query 25829 AACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCAGCCACT 25888 |||||||| || | |||||||| || || | ||||| || |||| | | || ||| Sbjct 6655 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCGACCTTATTGACCGCAACT 6714 Query 25889 AC-ATGTTTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGA 25947 | || ||| |||| |||||||| || || || || |||||||| ||||| || |||| Sbjct 6715 TCCATATTTATTACT-GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGT 6773 Query 25948 GCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTC 26007 || |||| | || ||| | |||||||||||||| || ||| | || | | | | Sbjct 6774 ACCCATTTCATGATCTTTACTTTACGGAAACAATATTATTTCA-GTGCCATTATTCTTAC 6832 Query 26008 CTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCA-CACTGGACGAGT 26066 ||| || || || | || |||||||| |||||||||| ||||| | | || || | Sbjct 6833 TTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGGGAAG-TGGCATCCGTTGATGAAT 6891 Query 26067 GGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTA 26113 || |||| || || || || ||| |||| ||| | | ||||||||| Sbjct 6892 GGTTATATAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTA 6938 Score = 84.2 bits (92), Expect = 6e-12 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 || ||||| | || || ||||| ||||| |||||| |||||| |||||||| || ||| Sbjct 7140 GTTTTCTTGATATACCCATTCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 7199 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATT 26310 ||||||||||| ||||| ||| | ||||| Sbjct 7200 TCTGGTACTTTCAACTTCATGATTGTATT 7228 >seq56894 Length=101133 Score = 150 bits (166), Expect = 5e-32 Identities = 243/346 (70%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221 || || ||| |||| ||||| |||||||||| |||| | | | || ||| ||| Sbjct 63395 CTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCATGTTGCAGCTGCTACCGCT 63454 Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 | ||||| | || || || | ||||| |||||| |||||| |||||||| || ||| Sbjct 63455 ATTTTCTTGATCTACCCAATCAGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 63514 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341 ||||||||||| ||||| ||| | |||||||| || || || || || || |||||| || Sbjct 63515 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACTCA 63574 Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTT-TTCGCTGCTATGCACGG 26400 || || ||| || || ||||||| ||||| || |||| ||| ||||||||| || Sbjct 63575 TTTCACATGTTAGGCGTAGCTGGGG--TTCGGCGG-CTTCTTATTCAGTGCTATGCATGG 63631 Query 26401 AAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGG 26460 ||||| ||||| | || ||||| ||||| | | || ||| | || Sbjct 63632 TTCCTTGGTAACTTCTAGTTTGATGAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 63691 Query 26461 CTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCA 26506 || | || || ||||| ||||| || |||||||| || || ||| Sbjct 63692 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCA 63737 >seq69198 Length=26917 Score = 136 bits (150), Expect = 1e-27 Identities = 223/320 (70%), Gaps = 1/320 (0%) Strand=Plus/Minus Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 || ||||| | || || |||| |||| |||||| | |||| |||||||| || ||| Sbjct 7117 GTTTTCTTGATCTACCCAATCGGTTAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATC 7058 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341 |||||||||||||| || ||| | |||||||| || || || || || || || ||| || Sbjct 7057 TCTGGTACTTTTAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATACACTCA 6998 Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGA 26401 ||||| ||| || || |||||||| ||||| || | | ||| | ||||||| || Sbjct 6997 TTCCA-ATGTTGGGCGTAGCTGGGGTATTCGGCGGCTCCTTATTCAGTTCTATGCATGGT 6939 Query 26402 AGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGC 26461 ||||| ||||| | || ||||| ||||| | | || ||| | | Sbjct 6938 TCCTTGGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATCTGCTAATGAAAGT 6879 Query 26462 TATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 26521 || | ||||| ||||| ||| || |||||||| || |||||||| || || ||| | Sbjct 6878 TACAGATTTGGTCAAGAGACAGAAACTTATAATATCGTTGCTGCACATGGTTATTTTAGC 6819 Query 26522 AGATTAATTTTTCAGTATGC 26541 |||| || || || |||| Sbjct 6818 CGATTGATCTTCCAACATGC 6799 >seq73955 Length=113899 Score = 132 bits (146), Expect = 1e-26 Identities = 184/254 (72%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 26513 TACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTC 26572 || ||||| |||| || || || ||||| ||||| || || | ||| | || ||| Sbjct 50341 TATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCCAATTCGTTACACTTC 50282 Query 26573 TTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATG 26632 || || ||| ||||||| || || || | ||| | || || | |||||| |||| ||| Sbjct 50281 TTCCTAGCTGCTTGGCCTGTAGTAGGTAACTGGTTCACTGCTTTAGGTATCAGCACTATG 50222 Query 26633 GCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGA- 26690 || || |||||||| ||||| || || ||||| || ||||| ||| || || || | Sbjct 50221 GCTTTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA--GATCGTG 50164 Query 26691 TAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACG 26750 |||| ||| | ||||||| | | ||||| |||||||| || | ||||||||||| | Sbjct 50163 TAATTAATACTTAGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 50104 Query 26751 AGCGTAATGCTCAT 26764 | |||||| ||||| Sbjct 50103 AACGTAATACTCAT 50090 >seq26852 Length=33301 Score = 109 bits (120), Expect = 2e-19 Identities = 253/376 (67%), Gaps = 4/376 (1%) Strand=Plus/Minus Query 25906 CTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTT 25965 |||||| | | || || |||||||| ||||| || |||| || ||| || || || Sbjct 11381 CTTCATTGTTGTTCCTCCAGTAGATATTGATGGTATTTGTGAACCCATTTTTGGATCTTT 11322 Query 25966 AATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACT 26025 | | ||||||||||||| || ||||| | | | || | |||| || || | | Sbjct 11321 ACTTCACGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTACAGCTATAAGTTT 11262 Query 26026 ACATTTTTACCCGATCTGGGAAGCTGGCA-CACTGGACGAGTGGCTATACAATGGCGGAC 26084 || |||||||| || | | |||| |||| | | || || ||| |||| ||||| || | Sbjct 11261 GCACTTTTACCCAATTTAGAAAGC-GGCATCCATTGATGAATGGTTATATAATGGTGGTC 11203 Query 26085 CATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGT 26144 | ||| |||| ||| | | ||||||||| | || ||||| || ||| ||| Sbjct 11202 CTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATAGGTCATGAGT 11143 Query 26145 GGGAAC-TATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCA 26203 |||| | || ||| | | || || ||| |||| ||||| |||||||||| | || || Sbjct 11142 GGGAGCTTAGCTT-CCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCTGCTCCT 11084 Query 26204 CTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGAT 26263 | || ||| | | | ||||| | || || |||| ||||| |||||| |||| Sbjct 11083 ATTGTAGCTGCTACCACTATTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTATGAT 11024 Query 26264 GGAATGCCTCTTGGTA 26279 || || || ||||| Sbjct 11023 GGTATACCCTCTGGTA 11008 >seq56815 Length=14128 Score = 104 bits (114), Expect = 7e-18 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 25823 ACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCA 25882 || || |||||||| || || |||||||| || || | ||||| || |||| | | Sbjct 3 ACCGAAAACCGTCTTTACGTTGGATGGTTTGGTGTTTTGATGATCCCGACCTTATTGACC 62 Query 25883 GCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCAT 25941 || ||| | ||| ||| | | |||||||| || || || || |||||||| ||||| || Sbjct 63 GCAACTTC-TGTATTTGTTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 121 Query 25942 ACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGC 25995 ||||| | ||||| || || ||| | |||||||||||||| || ||||| || Sbjct 122 TCGTGAACTTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCAGGTGC 175 >seq71024 Length=48960 Score = 102 bits (112), Expect = 2e-17 Identities = 116/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 26264 GGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACAT 26323 || |||||||| || | |||||||||||| ||||| ||| | ||||| || | || ||| Sbjct 13701 GGTATGCCTCTAGGAACCTCTGGTACTTTCAACTTCATGATTGTATTTCAGGTTGAGCAT 13760 Query 26324 AATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTC-- 26381 | || || |||||| |||| || ||| ||||| |||||||| |||| | ||||| Sbjct 13761 GACATCCTTATGCACTCATTTCACATGTTAGGTGTAGCTGGGGTATTCG--GCAGCTCCA 13818 Query 26382 TTTTCGCTGCTATGCACGGAAGTTTGGTTACTTC 26415 | ||| ||||||||| || |||||| ||||| Sbjct 13819 TATTCAGTGCTATGCATGGTTCTTTGGTAACTTC 13852 >seq74151 Length=15306 Score = 100 bits (110), Expect = 8e-17 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 26241 TCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTA 26300 |||| |||| |||||| |||| | |||||||| || |||||||||||||| ||||| | Sbjct 3298 TCGGTTAAGGAAGTTTTTCTGATAGCATGCCTCTAGGAATCTCTGGTACTTTCAACTTCA 3239 Query 26301 TGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTG 26360 || | |||||||| || || | || || || |||||||||| || || || || | Sbjct 3238 TGATTGTATTCCACGCTGAGTACAACATCCTTTTGCACCCATTTCACATATTAGGCGTAG 3179 Query 26361 CTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTC 26415 |||||| ||||| | | | ||| ||||||||| | ||||| ||||| Sbjct 3178 ATGGGGTATTCGGCGACTCCTTATTCAGTGCTATGCATAGTTCCTTGGTAACTTC 3124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146588226098448