Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq65532 181 3e-41 seq72083 176 1e-39 seq56894 167 7e-37 seq69198 150 5e-32 seq73955 122 3e-23 seq66950 122 3e-23 seq74151 116 1e-21 seq56815 104 7e-18 seq71024 96.9 1e-15 seq68591 96.9 1e-15 seq57833 95.1 4e-15 seq67167 82.4 2e-11 >seq65532 Length=34246 Score = 181 bits (200), Expect = 3e-41 Identities = 220/300 (73%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||| || || || ||||| ||||||||||||||||| || | || Sbjct 3236 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3177 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| || ||||||||||| | || | || || |||||| || || Sbjct 3176 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTTACTATCAACTACAGAT 3117 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || ||||| || || |||||||||||| || || | ||| || | | Sbjct 3116 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 3057 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 | || | || ||||||||||| |||||||| ||||| |||| ||| || || Sbjct 3056 TAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGGGAATTGTTGAAA 2997 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | | ||||| || |||||||| | || || |||||| || Sbjct 2996 CTAGCATATTGGAAGATCAATGGGCCAAAATAACCATGAGCGCCTACGATATTATACATC 2937 >seq72083 Length=18787 Score = 176 bits (194), Expect = 1e-39 Identities = 244/342 (71%), Gaps = 0/342 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||| || || || ||||| |||||||||| |||||| || | || Sbjct 7702 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAAATTCCATACCAAGGTTA 7643 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| || ||||||||||| | || | || | |||||| || || Sbjct 7642 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACAACCTTGACTATCAACTACAGAT 7583 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || ||||| || || |||||||||||| || || | ||| || | | Sbjct 7582 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 7523 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||| ||||||| | || ||| ||||| | || ||| || || Sbjct 7522 CAGATACCTACTACAGGCTAAGCAGCTAAGATGAAGTGTAACGAATGGGAATTTTTGAAA 7463 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 ||||||| |||| ||| |||| ||||| || |||||||| | || || ||||| || Sbjct 7462 TTAGCATATTGGACGATCAGTCGTCCAAAATAACCATGAGCGGGTACGATATTATAAGTT 7403 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCA 25794 ||||| ||||| | |||| | || || | || ||||||| Sbjct 7402 TCTTCCTCTTGACTGAATCTGTAACCTTCATTAGCAGATTCA 7361 Score = 150 bits (166), Expect = 5e-32 Identities = 219/308 (71%), Gaps = 1/308 (0%) Strand=Plus/Minus Query 26128 AAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCA 26187 ||||| | ||||| |||| ||| || ||||||||||| ||||| || || | || ||| Sbjct 6934 AAGTGTAGAACAATTAGTTCATAAGGACCACCGTTATATAACCATTCATCAACGGATGCC 6875 Query 26188 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 26247 |||||||||||||||| ||||| | ||| || || ||| | | | || || | | Sbjct 6874 ACTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAAGAATAATGGCAC-T 6816 Query 26248 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 26307 || || || |||||||| || ||||| | || ||| | || ||||||||||||| ||| Sbjct 6815 GAAATAATATTGTTTCCGTAAAGTAAAGATCATGAAATGGGTACACGAATACCATCAATA 6756 Query 26308 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 26367 || || ||||| ||||||| || ||| | | |||| | ||| || || | | Sbjct 6755 TCTACTGGAGGAGCAGCAATGAAGGCAGTAATAAATATGGAAGTTGCGGTCAATAAGGTC 6696 Query 26368 GGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAG 26427 |||||||| | || |||||||| || | || || ||||| || | || || | |||| Sbjct 6695 GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTTGATGCTAGTTATCCAG 6636 Query 26428 TCACATAA 26435 | ||| || Sbjct 6635 TTACAGAA 6628 Score = 86.0 bits (94), Expect = 2e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25927 AAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTC 25986 || |||| ||| || |||||||| || || || || ||||||||||||||||| ||||| Sbjct 7228 AATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTT 7169 Query 25987 CCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGG 26036 ||||| || || ||||| | ||||| |||| || ||||||| ||| Sbjct 7168 CCTTGACCGAATGGGTATATCAAGAAAACAGTGGTAGCAGCTGCAATAGG 7119 >seq56894 Length=101133 Score = 167 bits (184), Expect = 7e-37 Identities = 244/344 (71%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 25732 GCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGAT 25791 || || || || ||||| || ||||| ||||| |||||| | || || | || |||| Sbjct 63736 GCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGAT 63677 Query 25792 TCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCG 25851 ||| | || ||||| | || | ||||| || | || ||||||||| | Sbjct 63676 TCATTTTCTGTGGTTTCCCTCATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTG 63617 Query 25852 AATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATA 25911 ||||| || ||||| |||| || || || | ||| || || | ||||||||||| Sbjct 63616 AATAAGAAGCCGCCGAA--CCCCAGCTACGCCTAACATGTGAAATGAGTGCATAAGGATG 63559 Query 25912 TTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATA 25971 ||||| || ||||| || |||| ||| || |||||||| || || || || ||||||||| Sbjct 63558 TTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATA 63499 Query 25972 CCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCA 26031 |||||||| ||||| ||||| | | ||||||| ||||| | ||| || |||||| Sbjct 63498 CCATCAGAAAAACTTCCTTGACTGATTGGGTAGATCAAGAAAATAGCGGTAGCAGCTGCA 63439 Query 26032 ACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAG 26075 ||| | |||||||| || ||| ||||| || | ||| || || Sbjct 63438 ACATGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAG 63395 >seq69198 Length=26917 Score = 150 bits (166), Expect = 5e-32 Identities = 228/323 (71%), Gaps = 1/323 (0%) Strand=Plus/Plus Query 25695 AGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTC 25754 ||||| |||||||| | || | ||| || ||||| || ||||| || ||||| || || Sbjct 6798 AGCATGTTGGAAGATCAATCGGCTAAAATAACCATGTGCAGCAACGATATTATAAGTTTC 6857 Query 25755 TTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAAT 25814 | ||||| || ||| | || | | || ||||||| | || ||||| || Sbjct 6858 TGTCTCTTGACCAAATCTGTAACTTTCATTAGCAGATTCATTTTCTGTGGTTTCCTTGAT 6917 Query 25815 AAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCC 25874 | ||||| || | || ||||||| | |||||| | || ||||||||||| Sbjct 6918 CAAACTAGAAGTTACCAAGGAACCATGCATAGAACTGAATAAGGAGCCGCCGAATACCCC 6977 Query 25875 TGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAA 25934 || || || | ||| ||||| | || |||||||| ||||| || ||||| || |||| Sbjct 6978 AGCTACGCCCAACAT-TGGAATGAGTGTATAAGGATGTTGTGCTCAGCCTGGAATACAAT 7036 Query 25935 CATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCC 25994 ||| ||||| ||||| || || || || ||||||||||||| ||| ||||| |||| || Sbjct 7037 CATGAAATTAAAAGTACCAGAGATTCCTAGAGGCATACCATTAGAAAAACTTCCTTAACC 7096 Query 25995 AAAAGGGTAGACTAAGAATACAG 26017 | ||||||| ||||| |||| Sbjct 7097 GATTGGGTAGATCAAGAAAACAG 7119 >seq73955 Length=113899 Score = 122 bits (134), Expect = 3e-23 Identities = 174/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 25480 TTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTT 25539 ||||| ||||||||||||||||| || | || |||||||||| || |||||| |||| Sbjct 50097 TTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATGATATCAGCCTAAGTA 50156 Query 25540 GGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTA 25599 | || | | | |||||| || || || ||||| || || ||||| || || Sbjct 50157 TTAATTACACGATCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCGTTTAGGTTG 50216 Query 25600 AAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCC 25659 |||||||||||| || || | ||| || | ||| | | || ||||||||||| Sbjct 50217 AAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGTTACCTACTACAGGCCAAGCAGCT 50276 Query 25660 AGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCA 25719 |||||||| ||||| | | ||| || || |||||||| |||||||| | || ||| Sbjct 50277 AGGAAGAAGTGTAACGAATTGGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCA 50336 Query 25720 AAGTA 25724 || || Sbjct 50337 AAATA 50341 >seq66950 Length=22296 Score = 122 bits (134), Expect = 3e-23 Identities = 159/219 (73%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 25576 TTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCAT 25635 ||||| || || ||||| || || |||||||||||| || | ||| || | ||| Sbjct 3729 TTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTATATCTAA-AGCAGTGAACCAG 3671 Query 25636 ATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTA 25695 || | || ||||||||||| |||||||| ||||| |||| ||||| || ||| Sbjct 3670 ATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGGGATTTATTGAAACTA 3611 Query 25696 GCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCT 25755 ||||| |||||||| | || ||||| || |||||||| || || || ||||| || ||| Sbjct 3610 GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCT 3551 Query 25756 TCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCA 25794 || ||||| | |||| | || || | || ||||||| Sbjct 3550 TCCTCTTGACTGAATCTGTAACCTTCATTAGCAGATTCA 3512 >seq74151 Length=15306 Score = 116 bits (128), Expect = 1e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25840 TGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGA 25899 ||||||||| |||||| | | ||||||||||| | || || | || || || || Sbjct 3142 TGCATAGCACTGAATAAGGAGTCGCCGAATACCCCATCTACGCCTAATATGTGAAATGGG 3201 Query 25900 TGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATA 25959 |||| |||||| |||| || || || || |||| ||| || |||||||| || || || Sbjct 3202 TGCAAAAGGATGTTGTACTCAGCGTGGAATACAATCATGAAGTTGAAAGTACCAGAGATT 3261 Query 25960 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 26019 || |||||||| | |||||| ||||| |||| || | |||||| || || ||||| Sbjct 3262 CCTAGAGGCATGCTATCAGAAAAACTTCCTTAACCGATTTGGTAGATCAATAAAACAGCG 3321 Query 26020 AATGCTGCTGCAACAGG 26036 || ||||||||||| Sbjct 3322 GTAGCAGCTGCAACAGG 3338 >seq56815 Length=14128 Score = 104 bits (114), Expect = 7e-18 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 26239 ATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATA 26298 || || ||||| || || |||||||| || ||||| | ||| || ||| | ||||||||| Sbjct 178 ATGGCACCTGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAAGTTCACGAATA 119 Query 26299 CCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTT 26358 ||||| ||||| || ||||| ||||||| || || || | |||| | | ||| || Sbjct 118 CCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAACAAATACAGAAGTTGCGGTC 59 Query 26359 AAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 26408 || | | |||||||| | || |||||||| || || || || ||||| Sbjct 58 AATAAGGTCGGGATCATCAAAACACCAAACCATCCAACGTAAAGACGGTT 9 >seq71024 Length=48960 Score = 96.9 bits (106), Expect = 1e-15 Identities = 120/162 (74%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || ||||||||| ||||| | | ||||||||||| || ||||| | ||| || || Sbjct 13837 CCATGCATAGCACTGAATATGGAGCTGCCGAATACCCCAGCTACACCTAACATGTGAAAT 13778 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 | ||||||||||| | || || ||||||| |||| ||| || |||||||| || || Sbjct 13777 GAGTGCATAAGGATGTCATGCTCAACCTGAAATACAATCATGAAGTTGAAAGTACCAGAG 13718 Query 25957 ATACCAAGAGGCATACC-ATCAG-AGAAACTCCCTTGTCCAA 25996 | || ||||||||||| || || | ||| | || | ||||| Sbjct 13717 GTTCCTAGAGGCATACCTATAAGCAAAAAATTCCATATCCAA 13676 >seq68591 Length=37818 Score = 96.9 bits (106), Expect = 1e-15 Identities = 167/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 25634 ATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGC 25693 |||||||| || ||||||||||| |||||||| ||||| |||| || || || | Sbjct 5311 ATATGCAAT--ACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGGGAATCGTTGAAAC 5368 Query 25694 TAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCT 25753 ||||||| ||||| || | || ||||| || ||| ||| || || || ||||| || | Sbjct 5369 TAGCATATTGGAATATCAATCGGCCAAAATAATCATTAGCGGCTACGATATTATAAGTTT 5428 Query 25754 CTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAA 25813 |||| | ||| |||||| | || || | || | ||||| | || ||||| | | Sbjct 5429 CTTCCTTTTGACCGAATCTGTAACCTTCATTAGCATATTCATTTTCTGTGGTTTCCCTGA 5488 Query 25814 TAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCC 25873 | | ||||| || | || ||||||||| |||| | | | |||||||||| Sbjct 5489 TCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATTAGGAGCTGCCGAATACCC 5548 Query 25874 CT 25875 || Sbjct 5549 CT 5550 >seq57833 Length=3807 Score = 95.1 bits (104), Expect = 4e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25983 ACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGA 26042 ||| ||||| || | ||||||| ||||| ||||| || ||||||||||| ||||| Sbjct 1 ACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGA 60 Query 26043 ATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCC 26102 ||| || ||| ||||| || | ||| || | | | ||||| ||||| | || || Sbjct 61 ATATGCAACAACAATCCAAGGTCGCATACCCAAACGGAAGCTAAGCTCCCACTCACGACC 120 Query 26103 CAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTT 26162 || |||| | | | | | ||||| | ||||| |||| ||| || |||||||| Sbjct 121 CATGTAACAAGCTACACTAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTT 180 Query 26163 ATACAACCACTCGTCGAGGGTTGCAGCTTC 26192 ||| ||||| || || | || ||| ||||| Sbjct 181 ATATAACCATTCATCAACGGATGCCGCTTC 210 >seq67167 Length=42922 Score = 82.4 bits (90), Expect = 2e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 25454 CTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGG 25513 ||| ||| |||||||| || || || ||||| ||||||||||||||||| || | || | Sbjct 34485 CTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAG 34544 Query 25514 CACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACT 25573 |||| |||| || ||||||||||| | || | || | |||||| || || | Sbjct 34545 CACGATTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGATT 34604 Query 25574 GATTGAAGTTAAA 25586 ||||||| || || Sbjct 34605 GATTGAAATTGAA 34617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151850465916952