Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq72241 152 4e-32 seq42370 149 5e-31 seq73807 140 3e-28 seq65811 125 6e-24 seq73986 122 7e-23 >seq72241 Length=55963 Score = 152 bits (168), Expect = 4e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||| |||||||| ||||| |||||||||||||||| ||| ||| | || Sbjct 40419 AAGACGAGATGAAGAGTAGATTCCTTTTGGATATTGTAATCGGCGAGAGTCCTGCCGTCC 40478 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||| ||||| || || || || | | ||| ||||| || ||||| || || ||||| Sbjct 40479 TCCAACTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCCTTATCC 40538 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| || || || | || | || || || | || ||||||||||| | ||| Sbjct 40539 TGAATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTCTCAACTTCAAGAGTAATCGTC 40598 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | |||||| |||||||||||||| Sbjct 40599 TTGCCGGTCAGAGTTTTAACAAATATCTGCAT 40630 Score = 149 bits (164), Expect = 5e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | ||| ||||| || || || || ||||||||||| || | ||||| | || Sbjct 40191 AAGACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCAAGGGTTCTACCGTCT 40250 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| ||||| || || || || | ||||| ||||| || ||||| ||||| |||||| Sbjct 40251 TCCAGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGAATTCCTTCCTTATCT 40310 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| ||| || || | || | ||| ||||| ||||||| |||||||||| ||| Sbjct 40311 TGAATCTTTGCCTTAACGTTGTCAATAGTATCAGAACTTTCCACCTCAAGAGTGATGGTT 40370 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| |||||| ||||| || ||||| Sbjct 40371 TTGCCTGTTAGAGTTTTGACAAAAATTTGCAT 40402 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| || || | |||||| || || || ||||| || || ||||| || Sbjct 39948 CCACCCCTCAGACGCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGCT 40007 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | || ||||| ||||| || ||||| |||| | |||||||| || ||| Sbjct 40008 AGAGTACGACCGTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGGA 40067 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||| ||||| ||| || ||| | || | || ||||| |||| || Sbjct 40068 ATCCCTTCTTTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCAACC 40127 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | ||||| || || | || || ||||| |||||||| Sbjct 40128 TCAAGAGTAATAGTTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || ||||||||||| || | ||| | |||| || | ||| Sbjct 39744 TGCAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTACGCCCATCTTCAAGCTGC 39803 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || ||||| | | ||| ||||| || ||||| || ||||| || ||||| || Sbjct 39804 TTTCCAGCGAATATAAGCCTCTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGAATCTTG 39863 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | |||| || || || | || || || | || | ||| || || || Sbjct 39864 GTCTTCACATTATCTATGGTATCTGAACTCTCAACCTCTAACGTAATCGTCTTCCCAGTC 39923 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || |||||||||||||| Sbjct 39924 AATGTCTTCACAAATATCTGCAT 39946 >seq42370 Length=41228 Score = 149 bits (164), Expect = 5e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | ||||||||| || |||||||| |||||||||||||| | ||| | | |||| Sbjct 10189 AAGACGAGATGAAGGGTCGACTCTTTTTGAATATTGTAATCGGCAAGAGTCCGGCCATCC 10130 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||||||||| || ||||| || | | || || || || || || ||||| ||||| Sbjct 10129 TCCAATTGCTTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGAGGGATCCCTTCCTTATCC 10070 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 |||||||| || || | || | |||||| || | || || || ||||| | ||| Sbjct 10069 TGAATTTTAGCCTTGACGTTGTCAATAGTGTCGGAACTCTCAACCTCGAGAGTAATCGTC 10010 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| ||||| |||||||||||||| Sbjct 10009 TTTCCGGTTAGGGTTTTAACAAATATCTGCAT 9978 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | ||| || || || || || || || |||||||| || | ||||| |||| Sbjct 10417 AAGACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAAGGTTCTACCATCC 10358 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||| ||||| || ||||| |||| ||||| ||||| || ||||| || || |||||| Sbjct 10357 TCCAACTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGAATCCCCTCCTTATCT 10298 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| || || || | || | || ||||| | || || || | || | ||| Sbjct 10297 TGAATCTTCGCCTTAACGTTATCAATTGTATCAGAACTCTCGACCTCCAAGGTAATCGTC 10238 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | |||||| ||||| || ||||| Sbjct 10237 TTACCAGTCAGAGTTTTAACAAAGATTTGCAT 10206 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| ||||| || || ||||||||||| || | ||| | |||| || | ||| Sbjct 10864 TGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAAAGTACGTCCATCCTCGAGCTGC 10805 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | | ||| ||||| || ||||| || || ||||| || || || Sbjct 10804 TTCCCAGCGAAGATGAGCCTCTGCTGATCCGGGGGAATCCCCTCCTTATCCTGGATCTTG 10745 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | |||| || || || | || || || ||||| | ||||| || || Sbjct 10744 GCCTTCACATTATCTATGGTATCTGAGCTCTCAACCTCCAGAGTAATAGTTTTCCCTGTC 10685 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || |||||||||||||| Sbjct 10684 AATGTCTTGACAAATATCTGCAT 10662 >seq73807 Length=69832 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || ||||| || || ||||| || || || || ||||| || || ||||| || Sbjct 38928 CCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGCA 38987 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || || |||| || | || ||||| |||||||||| |||||| || || || ||| Sbjct 38988 AGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGGA 39047 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| |||||||| || || || | || | || ||||| |||| ||| Sbjct 39048 ATGCCTTCTTTGTCTTGAATCTTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCTACT 39107 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || || || || || | ||| || ||||| |||||||| Sbjct 39108 TCTAGGGTAACGGTCTTCCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | ||| ||||| || || |||||||| || ||||| || | || | |||| Sbjct 39855 AAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTATAATCTGCAAGGGTACGACCATCC 39914 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| ||| || || ||||| ||||| | ||| ||||| || ||||| ||||| || ||| Sbjct 39915 TCCAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGGGGAATTCCTTCCTTGTCT 39974 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||||||| ||| ||| | || | ||||||||| | || ||||| ||||| | || Sbjct 39975 TGAATTTTTGCTTTGACATTATCAATAGTGTCAGAACTCTCTACTTCGAGAGTTATTGTC 40034 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | || || ||||| |||||||| Sbjct 40035 TTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 40066 >seq65811 Length=66007 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || || |||||||| ||||| ||||| |||||||| ||||| Sbjct 55009 CCTCCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCGGCC 55068 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | | || || | |||||||| || || ||||| | || || || || ||| Sbjct 55069 AAGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGGA 55128 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || ||||||||||| ||||| | || | ||||| || | || ||| Sbjct 55129 ATGCCTTCCTTGTCTTGAATTTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCAACT 55188 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || ||||| || || || ||||| || ||||| Sbjct 55189 TCGAGCGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 55235 >seq73986 Length=64159 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | | ||||| || ||||| || |||||||| || ||||| || || | Sbjct 17036 TTCCTCCTCTAAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTCTGGATATTATAGTCAG 17095 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| | | |||| |||||||||||||| ||||| |||| | ||| |||||||| | Sbjct 17096 CCAAAGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGCTGATCGGGAG 17155 Query 101361 GAATGCCTTCTTTATCTTGA 101380 |||| ||||||||||| ||| Sbjct 17156 GAATACCTTCTTTATCCTGA 17175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395895399650814