Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq72241 143 2e-29
seq42370 123 2e-23
seq73807 98.7 8e-16
>seq72241
Length=55963
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| || |||||||||| ||| || ||| ||| |||||||| || ||||||| |
Sbjct 39948 CCACCCCTCAGACGCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGCT 40007
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | ||| |||| ||||||||||| |||||||| ||||||| |||||||||| |||
Sbjct 40008 AGAGTACGACCGTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGGA 40067
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || || || || ||||||| || ||| | | | | || || || |||
Sbjct 40068 ATCCCTTCTTTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCAACC 40127
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | ||||| ||||| || || | || || ||||||||||||||
Sbjct 40128 TCAAGAGTAATAGTTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174
Score = 109 bits (120), Expect = 4e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| || || ||||||||||||| ||| | || | || || | ||||
Sbjct 39744 TGCAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTACGCCCATCTTCAAGCTGC 39803
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| || || ||||| || | ||| ||||||| ||||| ||||| ||||| ||||||
Sbjct 39804 TTTCCAGCGAATATAAGCCTCTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGAATCTTG 39863
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | | | ||||| ||| ||||| | ||||||||| || || |||
Sbjct 39864 GTCTTCACATTATCTATGGTATCTGAACTCTCAACCTCTAACGTAATCGTCTTCCCAGTC 39923
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
|| || || ||||| ||||||||
Sbjct 39924 AATGTCTTCACAAATATCTGCAT 39946
Score = 107 bits (118), Expect = 1e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|||| ||| || | |||||| || ||| || |||||||||||||| | || ||| |
Sbjct 40185 AGCCTCAAGACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCAAGGGTTCTA 40244
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||| |||||| ||||| || || || ||||| ||||| | |||| || |||
Sbjct 40245 CCGTCTTCCAGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGAATTCCTTCC 40304
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || ||||||| || || | | || || || |||||||| | ||
Sbjct 40305 TTATCTTGAATCTTTGCCTTAACGTTGTCAATAGTATCAGAACTTTCCACCTCAAGAGTG 40364
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| ||||| || || | |||||| |||||||| ||||||
Sbjct 40365 ATGGTTTTGCCTGTTAGAGTTTTGACAAAAATTTGCATC 40403
>seq42370
Length=41228
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || |||| ||||| ||| || ||| ||| |||||||| || ||||||| |
Sbjct 10660 CCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGCT 10601
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| ||| | || ||||||||||| |||||||| |||| || ||| || |||| |||
Sbjct 10600 AGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGA 10541
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || ||||| || ||||||| || ||| | | | | || || || |||
Sbjct 10540 ATCCCTTCCTTATCCTGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTCAACC 10481
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| | ||||| ||||| || || | || || |||||||||||||||
Sbjct 10480 TCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCATC 10433
Score = 120 bits (132), Expect = 2e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|||| ||| || | |||||| || ||| || || || |||||||||| | ||| |
Sbjct 10423 AGCCTCAAGACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAAGGTTCTA 10364
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||||||||| |||||||| ||||| ||||| ||||||| |||| ||||||
Sbjct 10363 CCATCCTCCAACTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGAATCCCCTCC 10304
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || |||||| || || | | | | || || ||| ||||||| |||
Sbjct 10303 TTATCTTGAATCTTCGCCTTAACGTTATCAATTGTATCAGAACTCTCGACCTCCAAGGTA 10244
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||||| || || |||| |||||| ||||| || ||||||
Sbjct 10243 ATCGTCTTACCAGTCAGAGTTTTAACAAAGATTTGCATC 10205
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||||||||| || || | || | || || ||| || || ||||||||||||||||
Sbjct 10889 GCCGCCCCTGAGACGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATATTGTAATCAGC 10830
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
| | | || | || || | |||||| || || || || || | ||| ||||||| |||
Sbjct 10829 CAAAGTACGTCCATCCTCGAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCCGGGGG 10770
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
|| |||||||| || ||||| || ||| | | | | ||||| ||| ||
Sbjct 10769 AATCCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCTATGGTATCTGAGCTCTCAAC 10710
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| ||||| ||||| || ||||| || || ||||| ||||||||
Sbjct 10709 CTCCAGAGTAATAGTTTTCCCTGTCAATGTCTTGACAAATATCTGCAT 10662
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|||| ||| || | ||| || || ||||||||||||||||||||| | ||| | ||
Sbjct 10195 AGCCTCAAGACGAGATGAAGGGTCGACTCTTTTTGAATATTGTAATCGGCAAGAGTCCGG 10136
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||| ||||| || ||||| || || | || || |||| || | || |||
Sbjct 10135 CCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGAGGGATCCCTTCC 10076
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || ||| || || || | | || || || ||| ||||| | |||
Sbjct 10075 TTATCCTGAATTTTAGCCTTGACGTTGTCAATAGTGTCGGAACTCTCAACCTCGAGAGTA 10016
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| ||||| || | ||||| ||||| ||||||||
Sbjct 10015 ATCGTCTTTCCGGTTAGGGTTTTAACAAATATCTGCAT 9978
>seq73807
Length=69832
Score = 98.7 bits (108), Expect = 8e-16
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| | |||||||||||||| || || ||| ||||| || || |||||||
Sbjct 38927 GCCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGC 38986
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| | | | | || || | ||| ||||||||||||||||| ||||| || || | |||
Sbjct 38987 AAGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGG 39046
Query 48659 AACGCCCTCCTTGTCGCTAATCTT 48682
|| ||| || ||||| ||||||
Sbjct 39047 AATGCCTTCTTTGTCTTGAATCTT 39070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380569426428546
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |