Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq72241 143 2e-29 seq42370 123 2e-23 seq73807 98.7 8e-16 >seq72241 Length=55963 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||||||||| ||| || ||| ||| |||||||| || ||||||| | Sbjct 39948 CCACCCCTCAGACGCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGCT 40007 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| |||| ||||||||||| |||||||| ||||||| |||||||||| ||| Sbjct 40008 AGAGTACGACCGTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGGA 40067 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || || || ||||||| || ||| | | | | || || || ||| Sbjct 40068 ATCCCTTCTTTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCAACC 40127 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| ||||| || || | || || |||||||||||||| Sbjct 40128 TCAAGAGTAATAGTTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || ||||||||||||| ||| | || | || || | |||| Sbjct 39744 TGCAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTACGCCCATCTTCAAGCTGC 39803 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || ||||| || | ||| ||||||| ||||| ||||| ||||| |||||| Sbjct 39804 TTTCCAGCGAATATAAGCCTCTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGAATCTTG 39863 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | | ||||| ||| ||||| | ||||||||| || || ||| Sbjct 39864 GTCTTCACATTATCTATGGTATCTGAACTCTCAACCTCTAACGTAATCGTCTTCCCAGTC 39923 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| |||||||| Sbjct 39924 AATGTCTTCACAAATATCTGCAT 39946 Score = 107 bits (118), Expect = 1e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||| || | |||||| || ||| || |||||||||||||| | || ||| | Sbjct 40185 AGCCTCAAGACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCAAGGGTTCTA 40244 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || || || ||||| ||||| | |||| || ||| Sbjct 40245 CCGTCTTCCAGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGAATTCCTTCC 40304 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||||| || || | | || || || |||||||| | || Sbjct 40305 TTATCTTGAATCTTTGCCTTAACGTTGTCAATAGTATCAGAACTTTCCACCTCAAGAGTG 40364 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || || | |||||| |||||||| |||||| Sbjct 40365 ATGGTTTTGCCTGTTAGAGTTTTGACAAAAATTTGCATC 40403 >seq42370 Length=41228 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || |||| ||||| ||| || ||| ||| |||||||| || ||||||| | Sbjct 10660 CCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGCT 10601 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | || ||||||||||| |||||||| |||| || ||| || |||| ||| Sbjct 10600 AGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGA 10541 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||||| || ||| | | | | || || || ||| Sbjct 10540 ATCCCTTCCTTATCCTGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTCAACC 10481 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | ||||| ||||| || || | || || ||||||||||||||| Sbjct 10480 TCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCATC 10433 Score = 120 bits (132), Expect = 2e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||| || | |||||| || ||| || || || |||||||||| | ||| | Sbjct 10423 AGCCTCAAGACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAAGGTTCTA 10364 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| |||||||| ||||| ||||| ||||||| |||| |||||| Sbjct 10363 CCATCCTCCAACTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGAATCCCCTCC 10304 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || || | | | | || || ||| ||||||| ||| Sbjct 10303 TTATCTTGAATCTTCGCCTTAACGTTATCAATTGTATCAGAACTCTCGACCTCCAAGGTA 10244 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || || |||| |||||| ||||| || |||||| Sbjct 10243 ATCGTCTTACCAGTCAGAGTTTTAACAAAGATTTGCATC 10205 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||||||||| || || | || | || || ||| || || |||||||||||||||| Sbjct 10889 GCCGCCCCTGAGACGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATATTGTAATCAGC 10830 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | | || | || || | |||||| || || || || || | ||| ||||||| ||| Sbjct 10829 CAAAGTACGTCCATCCTCGAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCCGGGGG 10770 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||| || ||||| || ||| | | | | ||||| ||| || Sbjct 10769 AATCCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCTATGGTATCTGAGCTCTCAAC 10710 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| ||||| || ||||| || || ||||| |||||||| Sbjct 10709 CTCCAGAGTAATAGTTTTCCCTGTCAATGTCTTGACAAATATCTGCAT 10662 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||| || | ||| || || ||||||||||||||||||||| | ||| | || Sbjct 10195 AGCCTCAAGACGAGATGAAGGGTCGACTCTTTTTGAATATTGTAATCGGCAAGAGTCCGG 10136 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| || ||||| || || | || || |||| || | || ||| Sbjct 10135 CCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGAGGGATCCCTTCC 10076 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || || || | | || || || ||| ||||| | ||| Sbjct 10075 TTATCCTGAATTTTAGCCTTGACGTTGTCAATAGTGTCGGAACTCTCAACCTCGAGAGTA 10016 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| || | ||||| ||||| |||||||| Sbjct 10015 ATCGTCTTTCCGGTTAGGGTTTTAACAAATATCTGCAT 9978 >seq73807 Length=69832 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| | |||||||||||||| || || ||| ||||| || || ||||||| Sbjct 38927 GCCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGC 38986 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | | | || || | ||| ||||||||||||||||| ||||| || || | ||| Sbjct 38987 AAGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGG 39046 Query 48659 AACGCCCTCCTTGTCGCTAATCTT 48682 || ||| || ||||| |||||| Sbjct 39047 AATGCCTTCTTTGTCTTGAATCTT 39070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380569426428546