Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq35021 104 4e-17 >seq35021 Length=73443 Score = 104 bits (114), Expect = 4e-17 Identities = 377/573 (66%), Gaps = 19/573 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | || |||||||||||| ||| | ||||| Sbjct 66601 ATTTGGGAGATGTACAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAGGAGGTCGATCTA 66542 Query 25537 GCCAAGGACATGGACGGC--TGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT 25594 | ||||| | || | ||| | || || | ||||||| || || ||| Sbjct 66541 TCTCAGGACCTC--CGTCAATGGGAAGCCCTCACTCCCGACGAGCGTCACTTCATCACTC 66484 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| | || ||||| || || |||||||| || || |||||||| || ||| Sbjct 66483 ACGTTCTCGCCTTCTTCGCCGCTTCTGATGGCATTGTTTTGGAGAATCTCGCCGGTCGAT 66424 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCATC 25713 ||| | ||||| ||| || ||| ||| || ||||||||||| || |||||| Sbjct 66423 TCATGAAAGAAGTTCAGATTTCCGAAGCCC-GTGCCTTTTACGGTTTCCAAATCGCCATC 66365 Query 25714 GAAAATGTGCACTCTGAGGTGTAT-GCCAAGCTT-CTGATGACGTACATTACAGACGTCG 25771 || ||| | ||||| ||| ||||| | | ||| || | | ||||| | ||| | Sbjct 66364 GAGAATATTCACTCCGAGATGTATAGTC--TCTTGCTCGAGTCTTACATAAAGGACTCCA 66307 Query 25772 CCGAGAGAGATC-GGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 |||| ||| | | || ||| | || ||||| || || || | | | |||||| Sbjct 66306 ATGAGA-AGAACAGACTCTTTCGCGCAATCGAAACAATTCCTTGCGTTGAAAAGAAGGCC 66248 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 ||||| | |||||| || || | | | |||| ||| || | || ||| Sbjct 66247 AAATGGGCACTTCGTTGGATCGACGGCTCG---GAATCCTTTGCCGAACGTATAGTCGCC 66191 Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTC-AGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 || ||| ||| || || || |||||| | || ||||| || || || ||| | || Sbjct 66190 TTCGCTTGTGTCGAAGGAATATTTTTCTCGGGGAGTTTTTGC-GCGATATTTTGGTTAAA 66132 Query 25950 GCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 | | | | || | |||||||| || ||| || |||||| | ||| | | ||||| | Sbjct 66131 G-AAACGTGGCCTTATGCCCGGACTAACCTTCTCGAACGAGTTAATCTCCCGAGACGAAG 66073 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 |||||||| | ||||| || ||| | ||||||| Sbjct 66072 GTCTCCACTGCGATTTCGCTTGCTTACTCTACA 66040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927924059370880