Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq72241 87.8 2e-12
>seq72241
Length=55963
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || ||||| || || | || |||||||| ||||| || ||| |||
Sbjct 40174 ATGCAGATTTTTGTCAAGACCCTTACTGGTAAAACTATTACTCTTGAGGTTGAAAGTTCT 40115
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGA-GGGAGTGC-CCGTAGATC 28671
|| || | | || ||||| ||| || || ||||| |||| | | ||| ||||
Sbjct 40114 GATACCATCGATAATGTCAAGGCAAAGATTCAGGATAAAGAAGGGATTCCTCCG--GATC 40057
Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731
|||| ||||| |||||||| || || || |||||||| | ||| | || |||||||
Sbjct 40056 AACAAAGACTGATCTTTGCCGGGAAGCAGTTGGAAGACGGTCGTACTCTAGCTGATTATA 39997
Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765
|||||||||| || || ||||| || |||| ||
Sbjct 39996 ACATTCAAAAGGAGTCCACTCTTCATCTGGTGTT 39963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424993649185458
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |