Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq72241 87.8 2e-12 >seq72241 Length=55963 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || | || |||||||| ||||| || ||| ||| Sbjct 40174 ATGCAGATTTTTGTCAAGACCCTTACTGGTAAAACTATTACTCTTGAGGTTGAAAGTTCT 40115 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGA-GGGAGTGC-CCGTAGATC 28671 || || | | || ||||| ||| || || ||||| |||| | | ||| |||| Sbjct 40114 GATACCATCGATAATGTCAAGGCAAAGATTCAGGATAAAGAAGGGATTCCTCCG--GATC 40057 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 |||| ||||| |||||||| || || || |||||||| | ||| | || ||||||| Sbjct 40056 AACAAAGACTGATCTTTGCCGGGAAGCAGTTGGAAGACGGTCGTACTCTAGCTGATTATA 39997 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||||||||| || || ||||| || |||| || Sbjct 39996 ACATTCAAAAGGAGTCCACTCTTCATCTGGTGTT 39963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424993649185458