Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq72083 192 2e-44 seq65532 183 9e-42 seq66950 159 1e-34 seq56894 150 5e-32 seq73955 140 9e-29 seq69198 131 5e-26 seq26852 109 2e-19 seq68591 102 2e-17 seq57833 100 8e-17 >seq72083 Length=18787 Score = 192 bits (212), Expect = 2e-44 Identities = 238/326 (73%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||| || || || || || |||||||| | || | |||||||| Sbjct 7702 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAAATTCCATACCAAGGTTA 7643 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| || |||||||| || || || || || | | | | | | |||| Sbjct 7642 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACAACCTTGACTATCAACTACAGAT 7583 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || |||||||| || | |||||||||||| || | || | |||| ||| Sbjct 7582 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 7523 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 || |||||||| |||||| | ||||| | | ||| || | | ||||||| || || Sbjct 7522 CAGATACCTACTACAGGCTAAGCAGCTAAGATGAAGTGTAACGAATGGGAATTTTTGAAA 7463 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 |||||||||||| ||| || || |||||||| || ||||| | || ||||| ||||| Sbjct 7462 TTAGCATATTGGACGATCAGTCGTCCAAAATAACCATGAGCGGGTACGATATTATAAGTT 7403 Query 21771 TCTTCCTCTTGACCAAACTTGTAACC 21796 ||||||||||||| || ||||||| Sbjct 7402 TCTTCCTCTTGACTGAATCTGTAACC 7377 >seq65532 Length=34246 Score = 183 bits (202), Expect = 9e-42 Identities = 218/296 (74%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||| || || || || || |||||||| || || | |||||||| Sbjct 3236 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3177 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| || |||||||| || || || || | || | | | | | | |||| Sbjct 3176 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTTACTATCAACTACAGAT 3117 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || |||||||| || | |||||||||||| || | || | |||| ||| Sbjct 3116 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 3057 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 | |||||||| |||||||| ||||| || ||||| || | ||||||||| || || Sbjct 3056 TAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGGGAATTGTTGAAA 2997 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTA 21766 ||||||||||||||||| | | |||||||| || ||||| | || ||||| || Sbjct 2996 CTAGCATATTGGAAGATCAATGGGCCAAAATAACCATGAGCGCCTACGATATTATA 2941 >seq66950 Length=22296 Score = 159 bits (176), Expect = 1e-34 Identities = 161/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 21589 ATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAA 21648 ||| ||| || |||||||| || | |||||||||||| || | | | | |||| | Sbjct 3734 ATTTGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGT-GCTATATCTAAAGCAGTGA 3676 Query 21649 ACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAA 21708 |||| |||||||| |||||||| ||||| || ||||| || | |||||| ||||| | Sbjct 3675 ACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGGGATTTATTGA 3616 Query 21709 AGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAG 21768 | ||||||||||||||||| | || |||||||| || ||||| || || ||||| |||| Sbjct 3615 AACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAG 3556 Query 21769 TCTCTTCCTCTTGACCAAACTTGTAACC 21796 | ||||||||||||| || ||||||| Sbjct 3555 TTTCTTCCTCTTGACTGAATCTGTAACC 3528 >seq56894 Length=101133 Score = 150 bits (166), Expect = 5e-32 Identities = 242/347 (70%), Gaps = 2/347 (1%) Strand=Plus/Minus Query 21750 GCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAA 21809 || || || ||||| ||||| |||||||||||||| || ||||||| | || || Sbjct 63736 GCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGAT 63677 Query 21810 ACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAG 21869 | | ||| || || || | || | || || |||| | ||| ||||||||| | Sbjct 63676 TCATTTTCTGTGGTTTCCCTCATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTG 63617 Query 21870 AACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATA 21929 || || || || || | || || || || | ||||||||| | |||||||| || Sbjct 63616 AATAAGAAGCCGCCGAA--CCCCAGCTACGCCTAACATGTGAAATGAGTGCATAAGGATG 63559 Query 21930 TTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATA 21989 ||||||||||||||||| || | |||| ||||||| || || || || || | |||||| Sbjct 63558 TTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATA 63499 Query 21990 GCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCG 22049 ||||||||||| || || | | || || | | ||| | ||| || ||||| || Sbjct 63498 CCATCAGAAAAACTTCCTTGACTGATTGGGTAGATCAAGAAAATAGCGGTAGCAGCTGCA 63439 Query 22050 ACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCG 22096 ||| |||| || || |||||| ||||| || | ||| || || || Sbjct 63438 ACATGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGCCG 63392 >seq73955 Length=113899 Score = 140 bits (154), Expect = 9e-29 Identities = 178/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 21498 TTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTG 21557 || || |||||||| || || | |||||||| |||||||||| || |||||| | || Sbjct 50097 TTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATGATATCAGCCTAAGTA 50156 Query 21558 TTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTG 21617 || || || | | | | | | | | ||||||||| || |||||||| || | |||| Sbjct 50157 TTAATTACACGATCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCGTTTAGGTTG 50216 Query 21618 AAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCA 21677 |||||||| || | || | |||| ||||| ||||||| |||||||| ||||| Sbjct 50217 AAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGTTACCTACTACAGGCCAAGCAGCT 50276 Query 21678 AGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCA 21737 || ||||| || | | |||||| || || ||||||||||||||||| | || ||| Sbjct 50277 AGGAAGAAGTGTAACGAATTGGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCA 50336 Query 21738 AAATA 21742 ||||| Sbjct 50337 AAATA 50341 >seq69198 Length=26917 Score = 131 bits (144), Expect = 5e-26 Identities = 203/289 (70%), Gaps = 1/289 (0%) Strand=Plus/Plus Query 21713 AGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTC 21772 ||||| ||||||||| | || | |||||| || || |||||||| ||||| ||||| || Sbjct 6798 AGCATGTTGGAAGATCAATCGGCTAAAATAACCATGTGCAGCAACGATATTATAAGTTTC 6857 Query 21773 TTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAAT 21832 | |||||||||||| |||||| | || || | | ||| || || || || Sbjct 6858 TGTCTCTTGACCAAATCTGTAACTTTCATTAGCAGATTCATTTTCTGTGGTTTCCTTGAT 6917 Query 21833 GAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCC 21892 | || || |||| | ||| ||||||| | ||| || || || ||||| || Sbjct 6918 CAAACTAGAAGTTACCAAGGAACCATGCATAGAACTGAATAAGGAGCCGCCGAATACCCC 6977 Query 21893 GGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAG 21952 || || |||| ||| || || | || ||||| || ||||||||||||||||| || | Sbjct 6978 AGCTACGCCCAACAT-TGGAATGAGTGTATAAGGATGTTGTGCTCAGCCTGGAATACAAT 7036 Query 21953 CATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001 |||| | || || || || || || || | |||||| ||| ||||||| Sbjct 7037 CATGAAATTAAAAGTACCAGAGATTCCTAGAGGCATACCATTAGAAAAA 7085 >seq26852 Length=33301 Score = 109 bits (120), Expect = 2e-19 Identities = 237/355 (67%), Gaps = 0/355 (0%) Strand=Plus/Plus Query 21982 AGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCG 22041 |||| ||| ||||| ||||| || || || | || || | | ||| | || || | Sbjct 11014 AGGGTATACCATCATAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAATAGTGGTAG 11073 Query 22042 CAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGC 22101 |||| | | ||||||||| || |||||| ||||| || | ||| || || || ||| Sbjct 11074 CAGCTACAATAGGAGCAGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAGC 11133 Query 22102 TAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGA 22161 |||| |||||||| | || |||||| | || |||| | |||||| | || | | Sbjct 11134 TAAGCTCCCACTCATGACCTATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTA 11193 Query 22162 GTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGT 22221 ||| | ||||| || || || | ||||||||||| | || |||| | ||||||||| Sbjct 11194 GTTCATAAGGACCACCATTATATAACCATTCATCAATGGATGCCGCTTTCTAAATTGGGT 11253 Query 22222 AGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTAC 22281 | ||||| | | || || || | |||| | | | ||||| || || ||||| | Sbjct 11254 AAAAGTGCAAACTTATAGCTGTAGAAGTAGGAATAATGACACCTGAAATAATATTGTTTC 11313 Query 22282 CATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGG 22336 | | | | || ||| | |||||| | || ||||| || || || || || Sbjct 11314 CGTGAAGTAAAGATCCAAAAATGGGTTCACAAATACCATCAATATCTACTGGAGG 11368 >seq68591 Length=37818 Score = 102 bits (112), Expect = 2e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21663 ACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGG 21722 |||||||| ||||| || ||||| || | |||||||| || || |||||||||||| Sbjct 5320 ACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGGGAATCGTTGAAACTAGCATATTGG 5379 Query 21723 AAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGA 21782 || || | || |||||||| | | ||| || || ||||| ||||| ||||||| |||| Sbjct 5380 AATATCAATCGGCCAAAATAATCATTAGCGGCTACGATATTATAAGTTTCTTCCTTTTGA 5439 Query 21783 CCAAACTTGTAACC 21796 || || ||||||| Sbjct 5440 CCGAATCTGTAACC 5453 >seq57833 Length=3807 Score = 100 bits (110), Expect = 8e-17 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 22028 GAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCAT 22087 ||| ||||| || ||||| || |||||||| || || ||||||| ||||| || | ||| Sbjct 28 GAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAACAATCCAAGGTCGCAT 87 Query 22088 CCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAA 22147 || | || ||||||| |||||||| || ||||||||| | || | || | ||| Sbjct 88 ACCCAAACGGAAGCTAAGCTCCCACTCACGACCCATGTAACAAGCTACACTAAGTAAGAA 147 Query 22148 GTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGC 22207 ||| | || | |||| | ||||| ||||| || | ||||||||||| | || || Sbjct 148 GTGTAGAACAATTAGTTCATAAGGACCACCGTTATATAACCATTCATCAACGGATGCCGC 207 Query 22208 TTC 22210 ||| Sbjct 208 TTC 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146070314281560