Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq36876 109 7e-19 seq25908 96.9 4e-15 seq72016 86.0 7e-12 >seq36876 Length=11444 Score = 109 bits (120), Expect = 7e-19 Identities = 228/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| |||||||| | || || || || || |||||| || || || || Sbjct 10249 CCAGGTACAGGAAAGACATTGCTGGCTAAGGCAATTGCTGGTGAAGCAGGGGTTCCTTTT 10190 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || || | |||| | | ||||| ||||||||||||||||| ||||| | || Sbjct 10189 TTCTCAATT-TCTGGTTCTGAATTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTCGTGT 10131 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || ||||| || | | ||| || ||| || || ||||| || ||||||| || Sbjct 10130 CCGTGATCTTTTCAAGAAGGCCAAGGAGAATGCTCCCTGCATTGTATTTGTTGATGAAAT 10071 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGA 175550 |||||| || || | ||| | | |||| |||| || |||||| || || || Sbjct 10070 TGATGCTGTTGGGAGACAAAGAGGAACTGGAATTGGT---GGAGGAAATGATGAAAGGGA 10014 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGT 175610 |||||| | || || || || || || |||||||| ||||| | ||||| ||| | Sbjct 10013 ACAAACTCTCAACCAGCTCCTGACAGAAATGGATGGGTTTGAAGGAAACACTGGTATTAT 9954 Query 175611 GGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || ||||| || || ||||| | ||||| ||||| Sbjct 9953 TGTAATTGCAGCAACCAATCGTGCAGATATTCTTGA 9918 >seq25908 Length=45223 Score = 96.9 bits (106), Expect = 4e-15 Identities = 214/320 (67%), Gaps = 12/320 (4%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||| ||||| || |||| ||||| | || || ||||| || |||||||| Sbjct 41519 GGTGCAAAGATTCCAAAAGGCTGTCTTCTGGTCGGACCACCTGGTACAGGGAAGACCCTT 41460 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 | || |||| | || ||||| | || |||||| | || | || || | Sbjct 41459 TTAGCTAGAGCAGTTGCTGGTGAGGCTGGCGTGCCATTCTTTTCATGTGCAGCTTCAGAG 41400 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||| |||||||||||||||| || || || | ||| | ||||| | || Sbjct 41399 TTTGTTGAGTTGTTTGTTGGTGTGGGAGCTTCTAGAGTGAGGGATTTGTTTGAGAAGGCT 41340 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG- 175514 | || || || ||||| || ||||||||||||||||| || || | ||| | Sbjct 41339 AAGGCCAAGGCTCCTTGCATTGTTTTTATTGATGAGATTGATGCAGTTGGAAGGCAGAGA 41280 Query 175515 ----CAGCGCT-GGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 ||| ||| || ||| | ||| || |||||||||||||| |||||||| || Sbjct 41279 GGAGCAGGGCTTGGAGGT------GGAAACGATGAGAGAGAACAAACTATTAATCAGCTT 41226 Query 175570 CTCACCGAGATGGATGGCTT 175589 | || || ||||||||||| Sbjct 41225 TTAACTGAAATGGATGGCTT 41206 >seq72016 Length=67185 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 || || ||||| | |||| | |||||| |||| | |||||||||||| ||||||||| Sbjct 54685 TTTTGTGCTATATTTTGGCTTAAGAAGAGGGGATTGATGCCAGGCCTAACATTCTCAAAT 54744 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || ||||| || ||||||||||||||||| Sbjct 54745 GAGCTTATATCGAGAGATGAGGGTCTCCAC 54774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595978235469760