Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq36876 109 7e-19
seq25908 96.9 4e-15
seq72016 86.0 7e-12
>seq36876
Length=11444
Score = 109 bits (120), Expect = 7e-19
Identities = 228/336 (68%), Gaps = 8/336 (2%)
Strand=Plus/Minus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|||||||| |||||||| | || || || || || |||||| || || || ||
Sbjct 10249 CCAGGTACAGGAAAGACATTGCTGGCTAAGGCAATTGCTGGTGAAGCAGGGGTTCCTTTT 10190
Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433
|| || | |||| | | ||||| ||||||||||||||||| ||||| | ||
Sbjct 10189 TTCTCAATT-TCTGGTTCTGAATTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTCGTGT 10131
Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493
|| ||||| || | | ||| || ||| || || ||||| || ||||||| ||
Sbjct 10130 CCGTGATCTTTTCAAGAAGGCCAAGGAGAATGCTCCCTGCATTGTATTTGTTGATGAAAT 10071
Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGA 175550
|||||| || || | ||| | | |||| |||| || |||||| || || ||
Sbjct 10070 TGATGCTGTTGGGAGACAAAGAGGAACTGGAATTGGT---GGAGGAAATGATGAAAGGGA 10014
Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGT 175610
|||||| | || || || || || || |||||||| ||||| | ||||| ||| |
Sbjct 10013 ACAAACTCTCAACCAGCTCCTGACAGAAATGGATGGGTTTGAAGGAAACACTGGTATTAT 9954
Query 175611 GGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646
|| ||||| || || ||||| | ||||| |||||
Sbjct 9953 TGTAATTGCAGCAACCAATCGTGCAGATATTCTTGA 9918
>seq25908
Length=45223
Score = 96.9 bits (106), Expect = 4e-15
Identities = 214/320 (67%), Gaps = 12/320 (4%)
Strand=Plus/Minus
Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335
||||| ||||| || |||| ||||| | || || ||||| || ||||||||
Sbjct 41519 GGTGCAAAGATTCCAAAAGGCTGTCTTCTGGTCGGACCACCTGGTACAGGGAAGACCCTT 41460
Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395
| || |||| | || ||||| | || |||||| | || | || || |
Sbjct 41459 TTAGCTAGAGCAGTTGCTGGTGAGGCTGGCGTGCCATTCTTTTCATGTGCAGCTTCAGAG 41400
Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455
||||| ||| |||||||||||||||| || || || | ||| | ||||| | ||
Sbjct 41399 TTTGTTGAGTTGTTTGTTGGTGTGGGAGCTTCTAGAGTGAGGGATTTGTTTGAGAAGGCT 41340
Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG- 175514
| || || || ||||| || ||||||||||||||||| || || | ||| |
Sbjct 41339 AAGGCCAAGGCTCCTTGCATTGTTTTTATTGATGAGATTGATGCAGTTGGAAGGCAGAGA 41280
Query 175515 ----CAGCGCT-GGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569
||| ||| || ||| | ||| || |||||||||||||| |||||||| ||
Sbjct 41279 GGAGCAGGGCTTGGAGGT------GGAAACGATGAGAGAGAACAAACTATTAATCAGCTT 41226
Query 175570 CTCACCGAGATGGATGGCTT 175589
| || || |||||||||||
Sbjct 41225 TTAACTGAAATGGATGGCTT 41206
>seq72016
Length=67185
Score = 86.0 bits (94), Expect = 7e-12
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187
|| || ||||| | |||| | |||||| |||| | |||||||||||| |||||||||
Sbjct 54685 TTTTGTGCTATATTTTGGCTTAAGAAGAGGGGATTGATGCCAGGCCTAACATTCTCAAAT 54744
Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217
|| ||||| || |||||||||||||||||
Sbjct 54745 GAGCTTATATCGAGAGATGAGGGTCTCCAC 54774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595978235469760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |