Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq56894 190 3e-43 seq69198 181 1e-40 seq65532 161 1e-34 seq72083 159 4e-34 seq74151 120 4e-22 seq73955 116 5e-21 seq71024 116 5e-21 seq66950 116 5e-21 seq56815 95.1 1e-14 seq26828 93.3 5e-14 seq68591 91.5 2e-13 >seq56894 Length=101133 Score = 190 bits (210), Expect = 3e-43 Identities = 260/361 (72%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 8170 GCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGAC 8229 || || || |||||||| || ||||| |||||||| || | ||||| | || ||| Sbjct 63736 GCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGAT 63677 Query 8230 TCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTG 8289 || | ||| || || || || || | | ||| || || || ||||| |||||||||||| Sbjct 63676 TCATTTTCTGTGGTTTCCCTCATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTG 63617 Query 8290 AAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATG 8349 || | | || |||||| || ||||| ||| ||| || || | |||||||| ||| Sbjct 63616 AATAAGAAGCCGCCGAACC--CCAGCTACGCCTAACATGTGAAATGAGTGCATAAGGATG 63559 Query 8350 TTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATT 8409 || ||||| || |||||||| | ||||||||| || |||||||| || ||||||||||| Sbjct 63558 TTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATA 63499 Query 8410 CCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGAT 8469 |||||||| || || |||| | ||| || | ||||| | ||| |||||| | Sbjct 63498 CCATCAGAAAAACTTCCTTGACTGATTGGGTAGATCAAGAAAATAGCGGTAGCAGCTGCA 63439 Query 8470 ACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGA--TAACT 8527 || |||| |||||| ||| ||||| |||| |||||| | ||| || | ||||| Sbjct 63438 ACATGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGCCGGAATCATTTAACT 63379 Query 8528 C 8528 | Sbjct 63378 C 63378 >seq69198 Length=26917 Score = 181 bits (200), Expect = 1e-40 Identities = 233/320 (73%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 8134 GCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCT 8193 |||| |||||||| |||| | ||| || ||||| |||||||| |||||||| || ||| Sbjct 6799 GCATGTTGGAAGATCAATCGGCTAAAATAACCATGTGCAGCAACGATATTATAAGTTTCT 6858 Query 8194 TCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATT 8253 ||||||||||| | |||| | || ||| || | ||| || || || |||| Sbjct 6859 GTCTCTTGACCAAATCTGTAACTTTCATTAGCAGATTCATTTTCTGTGGTTTCCTTGATC 6918 Query 8254 AGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCT 8313 | | ||| || || || ||||| ||||||| |||||| | || || ||||| | || Sbjct 6919 AAACTAGAAGTTACCAAGGAACCATGCATAGAACTGAATAAGGAGCCGCCGAATACCCCA 6978 Query 8314 GCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAAC 8373 ||||| || ||| ||||| | || ||||| ||||| ||||| || |||||||| | | Sbjct 6979 GCTACGCCCAACAT-TGGAATGAGTGTATAAGGATGTTGTGCTCAGCCTGGAATACAATC 7037 Query 8374 ATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCA 8433 ||||| ||||| |||||||| || ||||||||||| |||| ||| || || | ||| Sbjct 7038 ATGAAATTAAAAGTACCAGAGATTCCTAGAGGCATACCATTAGAAAAACTTCCTTAACCG 7097 Query 8434 AATGGATATACTAAGAACAC 8453 | ||| || | ||||| || Sbjct 7098 ATTGGGTAGATCAAGAAAAC 7117 >seq65532 Length=34246 Score = 161 bits (178), Expect = 1e-34 Identities = 217/299 (73%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||| || || ||||| | ||||||||||||||||||||| | ||| Sbjct 3236 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3177 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | ||| ||| |||||| || ||| Sbjct 3176 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTTACTATCAACTACAGAT 3117 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || ||||| ||||| || ||||| |||| ||||| | || ||| ||| Sbjct 3116 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 3057 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAA---GACTTCTACTGTTGTTA 8127 | | || ||| || || | | ||| ||||||||||| | || | ||||| | Sbjct 3056 TAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGGGAATTGTTG--A 2999 Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATA 8186 ||| | ||||| |||||||| ||| ||||| || |||||||| | || |||||||| Sbjct 2998 AACTA-GCATATTGGAAGATCAATGGGCCAAAATAACCATGAGCGCCTACGATATTATA 2941 >seq72083 Length=18787 Score = 159 bits (176), Expect = 4e-34 Identities = 254/361 (70%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||| || || ||||| | ||||||||||| ||||||||| | ||| Sbjct 7702 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAAATTCCATACCAAGGTTA 7643 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | ||| | | |||||| || ||| Sbjct 7642 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACAACCTTGACTATCAACTACAGAT 7583 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || ||||| ||||| || ||||| |||| ||||| | || ||| ||| Sbjct 7582 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 7523 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG--AAGACTTCTACTGTTGTTAA 8128 || | || ||| || || | | ||| | || |||||| | || | | | || | || Sbjct 7522 CAGATACCTACTACAGGCTAAGCAGCTAAGATGAAGTGTAACGAATGGGAAT-TTTTGAA 7464 Query 8129 ACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGG 8188 | | ||||| |||| ||| | || ||||| || |||||||| | || |||||||| | Sbjct 7463 ATTA-GCATATTGGACGATCAGTCGTCCAAAATAACCATGAGCGGGTACGATATTATAAG 7405 Query 8189 TCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTC 8248 | ||||| ||||||| || | ||||| | || ||| || | ||| || || || | Sbjct 7404 TTTCTTCCTCTTGACTGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCC 7345 Query 8249 T 8249 | Sbjct 7344 T 7344 Score = 107 bits (118), Expect = 2e-18 Identities = 183/264 (69%), Gaps = 1/264 (0%) Strand=Plus/Minus Query 8586 ATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAA 8645 ||| ||||| |||||||| ||||| ||||| | | || ||||||| || || || || Sbjct 6914 ATAAGGACCACCGTTATATAACCATTCATCAACGGATGCCACTTCCCAGATTGGGTAAAA 6855 Query 8646 GTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATA 8705 ||| || || ||||| |||| ||| | |||| || || || |||||||| || Sbjct 6854 GTGCAAACCTATAGCTGCAGAAGTAAGAATAATGGCACT-GAAATAATATTGTTTCCGTA 6796 Query 8706 CATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAAT 8765 | || || | || || ||| |||||||||| || ||||| || || ||||||||||| Sbjct 6795 AAGTAAAGATCATGAAATGGGTACACGAATACCATCAATATCTACTGGAGGAGCAGCAAT 6736 Query 8766 AAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAA 8825 || || ||||| | || || | || ||| || ||||| | ||| ||||| Sbjct 6735 GAAGGCAGTAATAAATATGGAAGTTGCGGTCAATAAGGTCGGGATCATCAAAACACCAAA 6676 Query 8826 CCAACCGACATAAAGTCTGTTGTT 8849 ||| || | ||||| | ||| || Sbjct 6675 CCATCCAATGTAAAGACGGTTTTT 6652 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 8365 AATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAA 8424 ||||| | ||||||||| || |||||||| || ||||||||||| |||||||| || Sbjct 7228 AATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTT 7169 Query 8425 CCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGC 8465 || ||||| ||||| |||| ||||| || | | |||||| Sbjct 7168 CCTTGACCGAATGGGTATATCAAGAAAACAGTGGTAGCAGC 7128 >seq74151 Length=15306 Score = 120 bits (132), Expect = 4e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294 ||| || || || ||||| | | ||| || || || |||| |||||||||||||| | Sbjct 3099 TTCTGTGGTTTCCCTGATCATACTAGAAGTTACCAAGGAACTATGCATAGCACTGAATAA 3158 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 || | ||||| | || |||| ||| || || || || |||| ||| ||||| | Sbjct 3159 GGAGTCGCCGAATACCCCATCTACGCCTAATATGTGAAATGGGTGCAAAAGGATGTTGTA 3218 Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414 ||| || |||||||| | ||||||||| || |||||||| || ||||||||||| | ||| Sbjct 3219 CTCAGCGTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATGCTATC 3278 Query 8415 AGAGAA 8420 ||| || Sbjct 3279 AGAAAA 3284 >seq73955 Length=113899 Score = 116 bits (128), Expect = 5e-21 Identities = 178/249 (71%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 7917 ATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCTGTTTAATACGTCACCCCATGT 7976 ||| | ||||||||||||||||||||| | ||| || | ||| | | ||| || | || Sbjct 50096 ATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATGATATCAGCCTAAGT 50155 Query 7977 AGGAATGATTTTACCATTAACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTT 8036 | ||| | | | | | |||||| || |||||||| || || || ||||| ||||| Sbjct 50156 ATTAATTACACGATCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCGTTTAGGTT 50215 Query 8037 AAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGC 8096 || ||||| |||| ||||| | || ||| ||||| || ||| || || | | ||| Sbjct 50216 GAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGTTACCTACTACAGGCCAAGCAGC 50275 Query 8097 GAGGAAGAAGTG--AAGACTT-CTACTGTTGTTAAACGATGCATACTGGAAGATTAATCT 8153 ||||||||||| | || || | ||||| |||| | ||||| |||||||| |||| Sbjct 50276 TAGGAAGAAGTGTAACGAATTGGAATTGTTG--AAACTA-GCATATTGGAAGATCAATCG 50332 Query 8154 ACCAAAGTA 8162 ||||| || Sbjct 50333 GCCAAAATA 50341 >seq71024 Length=48960 Score = 116 bits (128), Expect = 5e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 8245 TCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCG 8304 || ||||| | | ||| || || |||||||| |||||||||||||| | || | ||| Sbjct 13867 TCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATATGGAGCTGCCG 13808 Query 8305 AACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGG 8364 || | || ||||| ||| ||| || || | |||||||| |||| |||||| | || Sbjct 13807 AATACCCCAGCTACACCTAACATGTGAAATGAGTGCATAAGGATGTCATGCTCAACCTGA 13748 Query 8365 AATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCC 8411 ||||| | ||||||||| || |||||||| | ||||||||||| || Sbjct 13747 AATACAATCATGAAGTTGAAAGTACCAGAGGTTCCTAGAGGCATACC 13701 >seq66950 Length=22296 Score = 116 bits (128), Expect = 5e-21 Identities = 192/272 (71%), Gaps = 9/272 (3%) Strand=Plus/Minus Query 8009 ATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTA 8068 ||| ||| || || || ||||| ||||| || ||||| |||| | || | | || ||| | Sbjct 3734 ATTTGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTA-TATCTAAAGCAGTGA 3676 Query 8069 ACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTG---TTGT 8125 |||| | || ||| || || | | ||| ||||||||||| | | || | || | Sbjct 3675 ACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTA---ATGAACGGGATTTAT 3619 Query 8126 T-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTA 8184 | |||| | ||||| |||||||| |||| ||||| || |||||||| || || |||||| Sbjct 3618 TGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTA 3560 Query 8185 TAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTC 8244 || || ||||| ||||||| || | ||||| | || ||| || | ||| || || Sbjct 3559 TAAGTTTCTTCCTCTTGACTGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTAGTT 3500 Query 8245 TCTCTGATTAGAGAAGATGTAACTAAAGAACC 8276 || || || | | ||| || || || ||||| Sbjct 3499 TCCCTAATCAAACTAGAAGTTACCAAGGAACC 3468 >seq56815 Length=14128 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 8680 GCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCG 8739 ||||| || || || |||||||| || | || || || | |||| ||||||||||||| Sbjct 175 GCACCTGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAAGTTCACGAATACCA 116 Query 8740 TCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAAC 8799 || ||||| || || ||||||||||| || || | | ||| || || || | || Sbjct 115 TCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAACAAATACAGAAGTTGCGGTCAAT 56 Query 8800 AAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTT 8846 ||| || ||||| | ||| |||||||| || || ||||| | ||| Sbjct 55 AAGGTCGGGATCATCAAAACACCAAACCATCCAACGTAAAGACGGTT 9 >seq26828 Length=17835 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 8226 AGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGC 8285 ||| || | ||| || || || ||||| | | ||| || || || ||||| |||||||| Sbjct 17688 AGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGC 17747 Query 8286 ACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAG 8345 |||||| | || || | ||| | || ||||| ||| ||| || || || |||||||| Sbjct 17748 ACTGAATAAGGAGCCGCTGAATACCCCAGCTACGCCTAACATGTGAAATGGGTGCATAAG 17807 Query 8346 AATGTTATGCTCTGCTTGGAATAC 8369 ||||| ||||| || |||||||| Sbjct 17808 GATGTTGTGCTCAGCCTGGAATAC 17831 >seq68591 Length=37818 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8134 GCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCT 8193 ||||| ||||| || |||| ||||| || ||| ||| || || |||||||| || ||| Sbjct 5371 GCATATTGGAATATCAATCGGCCAAAATAATCATTAGCGGCTACGATATTATAAGTTTCT 5430 Query 8194 TCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATT 8253 || | |||||| || | ||||| | || | | || | ||| || || || ||||| Sbjct 5431 TCCTTTTGACCGAATCTGTAACCTTCATTAGCATATTCATTTTCTGTGGTTTCCCTGATC 5490 Query 8254 AGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAA 8291 | | ||| || || || ||||| |||||||||||||| Sbjct 5491 AAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAA 5528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615251910999440