Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_020865.1
Length=45730
Score E
Sequences producing significant alignments: (Bits) Value
seq72083 192 2e-44
seq65532 183 9e-42
seq66950 159 1e-34
seq56894 150 5e-32
seq73955 140 9e-29
seq69198 131 5e-26
seq26852 109 2e-19
seq68591 102 2e-17
seq57833 100 8e-17
>seq72083
Length=18787
Score = 192 bits (212), Expect = 2e-44
Identities = 238/326 (73%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950
||||||| || ||||||||||||| ||||| ||||| || | ||||| || ||||||
Sbjct 7377 GGTTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTACCCGCTCATGGTTATTTT 7436
Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010
|| || || ||| |||||||||||| || || ||||||| | | || ||| | |
Sbjct 7437 GGACGACTGATCGTCCAATATGCTAATTTCAAAAATTCCCATTCGTTACACTTCATCTTA 7496
Query 42011 GCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTC 42070
||||| | |||||| |||||||| ||||| |||| | || | || |||||||||
Sbjct 7497 GCTGCTTAGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 7556
Query 42071 AACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAAC 42130
||| | || |||||||| || ||||||||| | | | | | | || || || ||
Sbjct 7557 AACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTTGTGTAATTAAT 7616
Query 42131 ACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAAC 42190
|| |||||||| || |||||||||| |||||||| | || | |||||||| || ||
Sbjct 7617 ACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAATTTATGCATGAACGTAAT 7676
Query 42191 GCACACAACTTCCCGCTTGACCTTGC 42216
|| || || ||||| || ||||| ||
Sbjct 7677 GCTCATAATTTCCCTCTAGACCTAGC 7702
>seq65532
Length=34246
Score = 183 bits (202), Expect = 9e-42
Identities = 218/296 (74%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 41921 TACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTT 41980
|| ||||| || | ||||| || |||||||| | | ||||||||||||||||| ||
Sbjct 2941 TATAATATCGTAGGCGCTCATGGTTATTTTGGCCCATTGATCTTCCAATATGCTAGTTTC 3000
Query 41981 AATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTT 42040
|| ||||||||| | || ||||| || ||||| |||||||| |||||||| | |||
Sbjct 3001 AACAATTCCCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTAGTTC 3060
Query 42041 GCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCT 42100
|||| | || | || |||||||||||| | || |||||||| || |||||||||
Sbjct 3061 ACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCT 3120
Query 42101 CTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAAC 42160
| | | | | | || | || || || || |||||||| || |||||||||| |||
Sbjct 3121 GTAGTTGATAGTAAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAAC 3180
Query 42161 CTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216
||||| | || || |||||||| || || || || || ||||| || ||||| ||
Sbjct 3181 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 3236
>seq66950
Length=22296
Score = 159 bits (176), Expect = 1e-34
Identities = 161/208 (77%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950
||||||| || ||||||||||||| ||||| ||||| || || ||||| || ||||||
Sbjct 3528 GGTTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 3587
Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010
|| || | ||||||||||||||||| || ||||| |||||| | || ||||| ||
Sbjct 3588 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAAATCCCGTTCATTACACTTCTTCCTA 3647
Query 42011 GCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTC 42070
||||| |||||||| |||||||| ||||| |||| | | | | || |||||||||
Sbjct 3648 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGATATAGC-ACTATGGCTTTC 3706
Query 42071 AACTTGAATGGTTTCAACTTTAACCAAT 42098
||| | || |||||||| || ||| |||
Sbjct 3707 AACCTAAACGGTTTCAATTTCAACAAAT 3734
>seq56894
Length=101133
Score = 150 bits (166), Expect = 5e-32
Identities = 242/347 (70%), Gaps = 2/347 (1%)
Strand=Plus/Plus
Query 41591 CGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACT 41650
|| || || ||| | || ||||| |||||| || || |||| ||| || ||||| ||
Sbjct 63392 CGGCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCATGTTGCAGCTGCTACC 63451
Query 41651 GCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGG 41710
||| | ||| | | || || | | || || ||||||||||| |||||| | ||
Sbjct 63452 GCTATTTTCTTGATCTACCCAATCAGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 63511
Query 41711 ATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCAT 41770
|| || || || ||||||| |||| | || ||||||||||||||||| || ||||||||
Sbjct 63512 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 63571
Query 41771 CCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCAC 41830
| ||||||||| | || || || || | || || || || ||| |||||||||
Sbjct 63572 TCATTTCACATGTTAGGCGTAGCTGGGG--TTCGGCGGCTTCTTATTCAGTGCTATGCAT 63629
Query 41831 GGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTAT 41890
||| | |||| || || | || | || || || ||| | | || || |
Sbjct 63630 GGTTCCTTGGTAACTTCTAGTTTGATGAGGGAAACCACAGAAAATGAATCTGCTAATGAA 63689
Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGC 41937
||||||| || |||||||||||||| ||||| ||||| || || ||
Sbjct 63690 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGC 63736
>seq73955
Length=113899
Score = 140 bits (154), Expect = 9e-29
Identities = 178/245 (73%), Gaps = 0/245 (0%)
Strand=Plus/Minus
Query 41945 TATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTC 42004
|||||||| || | ||||||||||||||||| || || |||||| | | || |||
Sbjct 50341 TATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCCAATTCGTTACACTTC 50282
Query 42005 TTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATG 42064
|| || ||||| |||||||| ||||||| ||||| |||| | || | || |||
Sbjct 50281 TTCCTAGCTGCTTGGCCTGTAGTAGGTAACTGGTTCACTGCTTTAGGTATCAGCACTATG 50222
Query 42065 GCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTG 42124
||||||||| | || |||||||| || ||||||||| | | | | | | | | ||
Sbjct 50221 GCTTTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGATCGTGTA 50162
Query 42125 ATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAG 42184
|| || || | |||||| || |||||||||| |||||||| | || || ||||||||
Sbjct 50161 ATTAATACTTAGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAA 50102
Query 42185 CGGAA 42189
|| ||
Sbjct 50101 CGTAA 50097
>seq69198
Length=26917
Score = 131 bits (144), Expect = 5e-26
Identities = 203/289 (70%), Gaps = 1/289 (0%)
Strand=Plus/Minus
Query 41686 TTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCA 41745
||||||| ||| |||||| | || || || || || || || | |||| | || |||||
Sbjct 7085 TTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTTAATTTCATGATTGTATTCCA 7026
Query 41746 GGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGG 41805
|||||||||||| || ||||| || | || || ||| |||| || || || ||||| ||
Sbjct 7025 GGCTGAGCACAACATCCTTATACACTCATTCCA-ATGTTGGGCGTAGCTGGGGTATTCGG 6967
Query 41806 TGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGAC 41865
|| || ||| | ||||||| ||| | |||| || || | || || ||
Sbjct 6966 CGGCTCCTTATTCAGTTCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAAGGAAAC 6907
Query 41866 GACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAA 41925
|| ||| | | || || | |||||| |||||||||||| ||| ||||| ||
Sbjct 6906 CACAGAAAATGAATCTGCTAATGAAAGTTACAGATTTGGTCAAGAGACAGAAACTTATAA 6847
Query 41926 TATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCT 41974
||| |||||||| || || |||||| | || | ||||||||| |||||
Sbjct 6846 TATCGTTGCTGCACATGGTTATTTTAGCCGATTGATCTTCCAACATGCT 6798
>seq26852
Length=33301
Score = 109 bits (120), Expect = 2e-19
Identities = 237/355 (67%), Gaps = 0/355 (0%)
Strand=Plus/Minus
Query 41351 CCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAAC 41410
|| || || || || ||||| || | |||||| | ||| || | | | || |||
Sbjct 11368 CCTCCAGTAGATATTGATGGTATTTGTGAACCCATTTTTGGATCTTTACTTCACGGAAAC 11309
Query 41411 AACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCA 41470
|| || || ||||| | | | |||| | || || || | | ||||| ||||||
Sbjct 11308 AATATTATTTCAGGTGTCATTATTCCTACTTCTACAGCTATAAGTTTGCACTTTTACCCA 11249
Query 41471 ATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACC 41530
|||| | |||| || | ||||||||||| | || || || ||||| | |||| |
Sbjct 11248 ATTTAGAAAGCGGCATCCATTGATGAATGGTTATATAATGGTGGTCCTTATGAACTAATT 11189
Query 41531 GTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTAT 41590
|| | |||||| | |||| || | |||||| || | |||||||| |||||||
Sbjct 11188 GTTCTACACTTCTTACTTGGTGTAGCTTGTTACATAGGTCATGAGTGGGAGCTTAGCTTC 11129
Query 41591 CGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACT 41650
|| || || ||| | || ||||| |||||| || ||||||||| | | ||||| ||
Sbjct 11128 CGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCTGCTCCTATTGTAGCTGCTACC 11069
Query 41651 GCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCT 41705
|| | ||| | | || || | || || || ||||| ||||| ||| ||||
Sbjct 11068 ACTATTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTATGATGGTATACCCT 11014
>seq68591
Length=37818
Score = 102 bits (112), Expect = 2e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950
||||||| || |||||| ||||||| ||||| ||||| || || ||| | | ||||||
Sbjct 5453 GGTTACAGATTCGGTCAAAAGGAAGAAACTTATAATATCGTAGCCGCTAATGATTATTTT 5394
Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010
|| || | || |||||||||||||| || || |||||||| | || ||||| ||
Sbjct 5393 GGCCGATTGATATTCCAATATGCTAGTTTCAACGATTCCCGTTCGTTACACTTCTTCCTA 5334
Query 42011 GCTGCCTGGCCTGT 42024
||||| ||||||||
Sbjct 5333 GCTGCTTGGCCTGT 5320
>seq57833
Length=3807
Score = 100 bits (110), Expect = 8e-17
Identities = 132/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 41477 GAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTC 41536
||||| || | ||||||||||| | || ||||| ||||| | |||| | || |
Sbjct 210 GAAGCGGCATCCGTTGATGAATGGTTATATAACGGTGGTCCTTATGAACTAATTGTTCTA 151
Query 41537 CACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTA 41596
|||||| | || | || | ||||||||| || |||||||| ||||||| || |
Sbjct 150 CACTTCTTACTTAGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCGTTTG 91
Query 41597 GGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTG 41656
|| ||| | || ||||| ||||||| || || |||||||| || ||||| || |||||
Sbjct 90 GGTATGCGACCTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTT 31
Query 41657 TTC 41659
|||
Sbjct 30 TTC 28
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146076708254608
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