Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq72083 192 2e-44 seq65532 183 9e-42 seq66950 159 1e-34 seq56894 150 5e-32 seq73955 140 9e-29 seq69198 131 5e-26 seq26852 109 2e-19 seq68591 102 2e-17 seq57833 100 8e-17 >seq72083 Length=18787 Score = 192 bits (212), Expect = 2e-44 Identities = 238/326 (73%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||||| || ||||||||||||| ||||| ||||| || | ||||| || |||||| Sbjct 7377 GGTTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTACCCGCTCATGGTTATTTT 7436 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010 || || || ||| |||||||||||| || || ||||||| | | || ||| | | Sbjct 7437 GGACGACTGATCGTCCAATATGCTAATTTCAAAAATTCCCATTCGTTACACTTCATCTTA 7496 Query 42011 GCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTC 42070 ||||| | |||||| |||||||| ||||| |||| | || | || ||||||||| Sbjct 7497 GCTGCTTAGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 7556 Query 42071 AACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAAC 42130 ||| | || |||||||| || ||||||||| | | | | | | || || || || Sbjct 7557 AACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTTGTGTAATTAAT 7616 Query 42131 ACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAAC 42190 || |||||||| || |||||||||| |||||||| | || | |||||||| || || Sbjct 7617 ACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAATTTATGCATGAACGTAAT 7676 Query 42191 GCACACAACTTCCCGCTTGACCTTGC 42216 || || || ||||| || ||||| || Sbjct 7677 GCTCATAATTTCCCTCTAGACCTAGC 7702 >seq65532 Length=34246 Score = 183 bits (202), Expect = 9e-42 Identities = 218/296 (74%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 41921 TACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTT 41980 || ||||| || | ||||| || |||||||| | | ||||||||||||||||| || Sbjct 2941 TATAATATCGTAGGCGCTCATGGTTATTTTGGCCCATTGATCTTCCAATATGCTAGTTTC 3000 Query 41981 AATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTT 42040 || ||||||||| | || ||||| || ||||| |||||||| |||||||| | ||| Sbjct 3001 AACAATTCCCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTAGTTC 3060 Query 42041 GCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCT 42100 |||| | || | || |||||||||||| | || |||||||| || ||||||||| Sbjct 3061 ACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCT 3120 Query 42101 CTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAAC 42160 | | | | | | || | || || || || |||||||| || |||||||||| ||| Sbjct 3121 GTAGTTGATAGTAAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAAC 3180 Query 42161 CTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 ||||| | || || |||||||| || || || || || ||||| || ||||| || Sbjct 3181 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 3236 >seq66950 Length=22296 Score = 159 bits (176), Expect = 1e-34 Identities = 161/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||||| || ||||||||||||| ||||| ||||| || || ||||| || |||||| Sbjct 3528 GGTTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 3587 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010 || || | ||||||||||||||||| || ||||| |||||| | || ||||| || Sbjct 3588 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAAATCCCGTTCATTACACTTCTTCCTA 3647 Query 42011 GCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTC 42070 ||||| |||||||| |||||||| ||||| |||| | | | | || ||||||||| Sbjct 3648 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGATATAGC-ACTATGGCTTTC 3706 Query 42071 AACTTGAATGGTTTCAACTTTAACCAAT 42098 ||| | || |||||||| || ||| ||| Sbjct 3707 AACCTAAACGGTTTCAATTTCAACAAAT 3734 >seq56894 Length=101133 Score = 150 bits (166), Expect = 5e-32 Identities = 242/347 (70%), Gaps = 2/347 (1%) Strand=Plus/Plus Query 41591 CGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACT 41650 || || || ||| | || ||||| |||||| || || |||| ||| || ||||| || Sbjct 63392 CGGCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCATGTTGCAGCTGCTACC 63451 Query 41651 GCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGG 41710 ||| | ||| | | || || | | || || ||||||||||| |||||| | || Sbjct 63452 GCTATTTTCTTGATCTACCCAATCAGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 63511 Query 41711 ATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCAT 41770 || || || || ||||||| |||| | || ||||||||||||||||| || |||||||| Sbjct 63512 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 63571 Query 41771 CCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCAC 41830 | ||||||||| | || || || || | || || || || ||| ||||||||| Sbjct 63572 TCATTTCACATGTTAGGCGTAGCTGGGG--TTCGGCGGCTTCTTATTCAGTGCTATGCAT 63629 Query 41831 GGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTAT 41890 ||| | |||| || || | || | || || || ||| | | || || | Sbjct 63630 GGTTCCTTGGTAACTTCTAGTTTGATGAGGGAAACCACAGAAAATGAATCTGCTAATGAA 63689 Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGC 41937 ||||||| || |||||||||||||| ||||| ||||| || || || Sbjct 63690 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGC 63736 >seq73955 Length=113899 Score = 140 bits (154), Expect = 9e-29 Identities = 178/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 41945 TATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTC 42004 |||||||| || | ||||||||||||||||| || || |||||| | | || ||| Sbjct 50341 TATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCCAATTCGTTACACTTC 50282 Query 42005 TTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATG 42064 || || ||||| |||||||| ||||||| ||||| |||| | || | || ||| Sbjct 50281 TTCCTAGCTGCTTGGCCTGTAGTAGGTAACTGGTTCACTGCTTTAGGTATCAGCACTATG 50222 Query 42065 GCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTG 42124 ||||||||| | || |||||||| || ||||||||| | | | | | | | | || Sbjct 50221 GCTTTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGATCGTGTA 50162 Query 42125 ATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAG 42184 || || || | |||||| || |||||||||| |||||||| | || || |||||||| Sbjct 50161 ATTAATACTTAGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAA 50102 Query 42185 CGGAA 42189 || || Sbjct 50101 CGTAA 50097 >seq69198 Length=26917 Score = 131 bits (144), Expect = 5e-26 Identities = 203/289 (70%), Gaps = 1/289 (0%) Strand=Plus/Minus Query 41686 TTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCA 41745 ||||||| ||| |||||| | || || || || || || || | |||| | || ||||| Sbjct 7085 TTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTTAATTTCATGATTGTATTCCA 7026 Query 41746 GGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGG 41805 |||||||||||| || ||||| || | || || ||| |||| || || || ||||| || Sbjct 7025 GGCTGAGCACAACATCCTTATACACTCATTCCA-ATGTTGGGCGTAGCTGGGGTATTCGG 6967 Query 41806 TGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGAC 41865 || || ||| | ||||||| ||| | |||| || || | || || || Sbjct 6966 CGGCTCCTTATTCAGTTCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAAGGAAAC 6907 Query 41866 GACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAA 41925 || ||| | | || || | |||||| |||||||||||| ||| ||||| || Sbjct 6906 CACAGAAAATGAATCTGCTAATGAAAGTTACAGATTTGGTCAAGAGACAGAAACTTATAA 6847 Query 41926 TATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCT 41974 ||| |||||||| || || |||||| | || | ||||||||| ||||| Sbjct 6846 TATCGTTGCTGCACATGGTTATTTTAGCCGATTGATCTTCCAACATGCT 6798 >seq26852 Length=33301 Score = 109 bits (120), Expect = 2e-19 Identities = 237/355 (67%), Gaps = 0/355 (0%) Strand=Plus/Minus Query 41351 CCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAAC 41410 || || || || || ||||| || | |||||| | ||| || | | | || ||| Sbjct 11368 CCTCCAGTAGATATTGATGGTATTTGTGAACCCATTTTTGGATCTTTACTTCACGGAAAC 11309 Query 41411 AACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCA 41470 || || || ||||| | | | |||| | || || || | | ||||| |||||| Sbjct 11308 AATATTATTTCAGGTGTCATTATTCCTACTTCTACAGCTATAAGTTTGCACTTTTACCCA 11249 Query 41471 ATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACC 41530 |||| | |||| || | ||||||||||| | || || || ||||| | |||| | Sbjct 11248 ATTTAGAAAGCGGCATCCATTGATGAATGGTTATATAATGGTGGTCCTTATGAACTAATT 11189 Query 41531 GTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTAT 41590 || | |||||| | |||| || | |||||| || | |||||||| ||||||| Sbjct 11188 GTTCTACACTTCTTACTTGGTGTAGCTTGTTACATAGGTCATGAGTGGGAGCTTAGCTTC 11129 Query 41591 CGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACT 41650 || || || ||| | || ||||| |||||| || ||||||||| | | ||||| || Sbjct 11128 CGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCTGCTCCTATTGTAGCTGCTACC 11069 Query 41651 GCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCT 41705 || | ||| | | || || | || || || ||||| ||||| ||| |||| Sbjct 11068 ACTATTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTATGATGGTATACCCT 11014 >seq68591 Length=37818 Score = 102 bits (112), Expect = 2e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||||| || |||||| ||||||| ||||| ||||| || || ||| | | |||||| Sbjct 5453 GGTTACAGATTCGGTCAAAAGGAAGAAACTTATAATATCGTAGCCGCTAATGATTATTTT 5394 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010 || || | || |||||||||||||| || || |||||||| | || ||||| || Sbjct 5393 GGCCGATTGATATTCCAATATGCTAGTTTCAACGATTCCCGTTCGTTACACTTCTTCCTA 5334 Query 42011 GCTGCCTGGCCTGT 42024 ||||| |||||||| Sbjct 5333 GCTGCTTGGCCTGT 5320 >seq57833 Length=3807 Score = 100 bits (110), Expect = 8e-17 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 41477 GAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTC 41536 ||||| || | ||||||||||| | || ||||| ||||| | |||| | || | Sbjct 210 GAAGCGGCATCCGTTGATGAATGGTTATATAACGGTGGTCCTTATGAACTAATTGTTCTA 151 Query 41537 CACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTA 41596 |||||| | || | || | ||||||||| || |||||||| ||||||| || | Sbjct 150 CACTTCTTACTTAGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCGTTTG 91 Query 41597 GGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTG 41656 || ||| | || ||||| ||||||| || || |||||||| || ||||| || ||||| Sbjct 90 GGTATGCGACCTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTT 31 Query 41657 TTC 41659 ||| Sbjct 30 TTC 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146076708254608