Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq65532 178 4e-40 seq72083 159 1e-34 seq56894 150 5e-32 seq69198 136 1e-27 seq73955 132 1e-26 seq26852 109 2e-19 seq56815 104 7e-18 seq71024 102 2e-17 seq74151 100 8e-17 >seq65532 Length=34246 Score = 178 bits (196), Expect = 4e-40 Identities = 217/296 (73%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || || |||||||||||||| || ||||||||||| | || |||||| Sbjct 3236 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3177 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || ||| ||| ||||| || Sbjct 3176 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTTACTATCAACTACAGAT 3117 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || ||||| |||||||| || ||||| |||| |||||| | || || | | Sbjct 3116 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 3057 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 | || || || || ||||||| ||| || ||||| || | |||||| || || ||| Sbjct 3056 TAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGGGAATTGTTGAAA 2997 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATA 26172 || ||||| || || || ||| ||||| || || || || | || |||||||| Sbjct 2996 CTAGCATATTGGAAGATCAATGGGCCAAAATAACCATGAGCGCCTACGATATTATA 2941 >seq72083 Length=18787 Score = 159 bits (176), Expect = 1e-34 Identities = 222/311 (71%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || || |||||||||||||| || ||||||| ||| | || |||||| Sbjct 7702 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAAATTCCATACCAAGGTTA 7643 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 7642 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACAACCTTGACTATCAACTACAGAT 7583 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || ||||| |||||||| || ||||| |||| |||||| | || || | | Sbjct 7582 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 7523 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||| ||| ||| | | ||| || | ||| || || || ||| Sbjct 7522 CAGATACCTACTACAGGCTAAGCAGCTAAGATGAAGTGTAACGAATGGGAATTTTTGAAA 7463 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 | ||||| || | || | || ||||| || || || || | || |||||||| || Sbjct 7462 TTAGCATATTGGACGATCAGTCGTCCAAAATAACCATGAGCGGGTACGATATTATAAGTT 7403 Query 26177 TCTTCATCTTG 26187 ||||| ||||| Sbjct 7402 TCTTCCTCTTG 7392 Score = 122 bits (134), Expect = 3e-23 Identities = 203/287 (71%), Gaps = 5/287 (2%) Strand=Plus/Minus Query 26548 TAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTG- 26606 ||||||||| | | ||| |||| ||| || || || || |||| ||| || || | | Sbjct 6938 TAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTATATAACCATTCATCAACGGA 6879 Query 26607 TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTG 26666 ||||| |||||||||| |||||||| || | || || || ||| | | | | | Sbjct 6878 TGCCA-CTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAAGAATAATGG 6820 Query 26667 CTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCAT 26726 | | ||| || |||||||||||||| | ||| || | |||| || |||| || |||| Sbjct 6819 CAC-TGAAATAATATTGTTTCCGTAAAGTAAAGATCATGAAATGGGTACACGAATACCAT 6761 Query 26727 CTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACAT-GTAGTGGCTGCGAGT 26785 | |||||||| || || || || |||||||| |||| ||| || | ||| || | | | Sbjct 6760 CAATATCTACTGGAGGAGCAGCAATGAAGGC-AGTAATAAATATGGAAGTTGCGGTCAAT 6702 Query 26786 AAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTT 26832 ||| || ||||| | || || |||||||| | || |||||||| Sbjct 6701 AAGGTCGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 6655 Score = 84.2 bits (92), Expect = 6e-12 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 26351 AATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTC 26410 ||||| | ||| ||||| |||||||||||||| || |||||||| |||||| |||||| Sbjct 7228 AATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTT 7169 Query 26411 CCTTGTCCGAAAGGATAAACTAAGAACAC 26439 ||||| ||||| || || | ||||| || Sbjct 7168 CCTTGACCGAATGGGTATATCAAGAAAAC 7140 >seq56894 Length=101133 Score = 150 bits (166), Expect = 5e-32 Identities = 243/346 (70%), Gaps = 4/346 (1%) Strand=Plus/Minus Query 26155 TGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGA 26214 ||| || || |||||||| || ||||| ||||| || || | || || | ||| || Sbjct 63737 TGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGA 63678 Query 26215 GACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGC 26274 | | ||||| ||||| || | ||||| ||||| || ||||||||| Sbjct 63677 TTCATTTTCTGTGGTTTCCCTCATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACT 63618 Query 26275 GAA-AAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTA 26333 ||| |||| || ||||| ||||||| || || ||| || |||| |||||| || | Sbjct 63617 GAATAAGAAG-CCGCCGAA--CCCCAGCTACGCCTAACATGTGAAATGAGTGCATAAGGA 63561 Query 26334 TATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCA 26393 | || || || || |||||||| | ||| ||||| |||||||||||||| || ||||||| Sbjct 63560 TGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCA 63501 Query 26394 TTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGG 26453 | |||||| |||||| ||||| | || || || | ||||| | ||| ||| || | Sbjct 63500 TACCATCAGAAAAACTTCCTTGACTGATTGGGTAGATCAAGAAAATAGCGGTAGCAGCTG 63441 Query 26454 ATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAG 26499 | | |||| |||||||||| ||||| |||| ||| || || Sbjct 63440 CAACATGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAG 63395 >seq69198 Length=26917 Score = 136 bits (150), Expect = 1e-27 Identities = 223/320 (70%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 26120 GCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCT 26179 |||| || || || |||| | ||| || || |||||||| || |||||||| || ||| Sbjct 6799 GCATGTTGGAAGATCAATCGGCTAAAATAACCATGTGCAGCAACGATATTATAAGTTTCT 6858 Query 26180 TCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATA 26239 ||||| ||||| | || | | ||| || | | ||||| ||||| || Sbjct 6859 GTCTCTTGACCAAATCTGTAACTTTCATTAGCAGATTCATTTTCTGTGGTTTCCTTGATC 6918 Query 26240 AGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCA 26299 | ||||| ||||| || ||||||| | ||| | | || ||||| |||||| Sbjct 6919 AAACTAGAAGTTACCAAGGAACCATGCATAGAACTGAATAAGGAGCCGCCGAATACCCCA 6978 Query 26300 GCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAAC 26359 || || || ||| ||||||| ||| || || || || || || || |||||||| | | Sbjct 6979 GCTACGCCCAACAT-TGGAATGAGTGTATAAGGATGTTGTGCTCAGCCTGGAATACAATC 7037 Query 26360 ATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCG 26419 || || ||||||||||||||||| || |||||||| |||| | |||||| |||| ||| Sbjct 7038 ATGAAATTAAAAGTACCAGAGATTCCTAGAGGCATACCATTAGAAAAACTTCCTTAACCG 7097 Query 26420 AAAGGATAAACTAAGAACAC 26439 | || || | ||||| || Sbjct 7098 ATTGGGTAGATCAAGAAAAC 7117 >seq73955 Length=113899 Score = 132 bits (146), Expect = 1e-26 Identities = 184/254 (72%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 25897 ATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACATCAGC 25956 ||||| |||||| || ||||||||||| | || |||||||| ||||| | | |||||| Sbjct 50090 ATGAGTATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATGATATCAGC 50149 Query 25957 CCATGTAGGTATTA-TCTTTCCATTAAC-ATCTACTACTGACTGGTTAAAGTTAAAACCA 26014 | | ||| |||| | || || || ||| ||||| || ||||| || || ||||| Sbjct 50150 CTAAGTATTAATTACACGATC--TTGACTATCAACTACAGATTGGTTGAAATTGAAACCG 50207 Query 26015 TTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGC 26074 |||||||| || ||||| |||| |||||| | || || | ||| | || || || ||| Sbjct 50208 TTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGTTACCTACTACAGGC 50267 Query 26075 CAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATT 26134 |||| ||| || ||||| || | ||| | || || ||||| ||||| || || || Sbjct 50268 CAAGCAGCTAGGAAGAAGTGTAACGAATTGGAATTGTTGAAACTAGCATATTGGAAGATC 50327 Query 26135 AATCTCCCAAAGTA 26148 |||| ||||| || Sbjct 50328 AATCGGCCAAAATA 50341 >seq26852 Length=33301 Score = 109 bits (120), Expect = 2e-19 Identities = 253/376 (67%), Gaps = 4/376 (1%) Strand=Plus/Plus Query 26382 TACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTG 26441 ||||| || || |||||| |||||| ||||| |||| || || | ||||| | | Sbjct 11008 TACCAGAGGGTATACCATCATAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAATAG 11067 Query 26442 CGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTC 26501 | ||| || | || || | |||||||||| ||||| |||| ||| || || | Sbjct 11068 TGGTAGCAGCTACAATAGGAGCAGAATATGCAACAGCAATCCAAGGTCGCATACCCAGAC 11127 Query 26502 TGTAAGATA-GTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAG 26560 | ||| || | ||||||| ||| || ||||| || | ||||||||| | Sbjct 11128 GG-AAGCTAAGCTCCCACTCATGACCTATGTAACAAGCTACACCAAGTAAGAAGTGTAGA 11186 Query 26561 ATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTG-TGCCAGCTTCCCA 26619 | ||| |||| ||| || || ||||| |||| ||| || || | | |||| |||| | | Sbjct 11187 ACAATTAGTTCATAAGGACCACCATTATATAACCATTCATCAATGGATGCC-GCTTTCTA 11245 Query 26620 GATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTAT 26679 || |||||||| || | | || || |||| | || | | | ||||| || || Sbjct 11246 AATTGGGTAAAAGTGCAAACTTATAGCTGTAGAAGTAGGAATAATGACACCTGAAATAAT 11305 Query 26680 ATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGG 26739 ||||||||||| | ||| || || ||| || |||| || ||||| |||||||| || Sbjct 11306 ATTGTTTCCGTGAAGTAAAGATCCAAAAATGGGTTCACAAATACCATCAATATCTACTGG 11365 Query 26740 CGGTGCTGCGATGAAG 26755 || | | |||||| Sbjct 11366 AGGAACAACAATGAAG 11381 >seq56815 Length=14128 Score = 104 bits (114), Expect = 7e-18 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 26666 GCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCA 26725 || ||||| || |||||||||||||| | ||| || || ||||| | ||||| || ||| Sbjct 175 GCACCTGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAAGTTCACGAATACCA 116 Query 26726 TCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAG 26784 || |||||||| || || || || |||||||| | | ||| ||| | ||| || | | Sbjct 115 TCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAACAAATACA-GAAGTTGCGGTCAA 57 Query 26785 TAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGT 26838 |||| || ||||| | || || |||||||| || || |||||||| || || Sbjct 56 TAAGGTCGGGATCATCAAAACACCAAACCATCCAACGTAAAGACGGTTTTCGGT 3 >seq71024 Length=48960 Score = 102 bits (112), Expect = 2e-17 Identities = 116/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAA--GAGCTCCACCGAAAACCCCAGCAA 26303 ||||| |||||| || ||||||||| ||| | ||||| | |||| |||||||| | Sbjct 13852 GAAGTTACCAAAGAACCATGCATAGCACTGAATATGGAGCTGC--CGAATACCCCAGCTA 13795 Query 26304 CACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAA 26363 |||| ||| || |||| |||||| || || | ||| || | || ||||| | ||| | Sbjct 13794 CACCTAACATGTGAAATGAGTGCATAAGGATGTCATGCTCAACCTGAAATACAATCATGA 13735 Query 26364 AGTTAAAAGTACCAGAGATACCAAGAGGCATTCC 26397 |||| |||||||||||| | || |||||||| || Sbjct 13734 AGTTGAAAGTACCAGAGGTTCCTAGAGGCATACC 13701 >seq74151 Length=15306 Score = 100 bits (110), Expect = 8e-17 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACA 26305 ||||| ||||| | ||||||||| ||| | | | ||||| |||||| | || Sbjct 3124 GAAGTTACCAAGGAACTATGCATAGCACTGAATAAGGAGTCGCCGAATACCCCATCTACG 3183 Query 26306 CCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAG 26365 || || || |||||||||| || || || | || || |||||||| | ||| ||| Sbjct 3184 CCTAATATGTGAAATGGGTGCAAAAGGATGTTGTACTCAGCGTGGAATACAATCATGAAG 3243 Query 26366 TTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGA 26420 || |||||||||||||| || |||||||| | |||| |||||| |||| |||| Sbjct 3244 TTGAAAGTACCAGAGATTCCTAGAGGCATGCTATCAGAAAAACTTCCTTAACCGA 3298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147572897947840