Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq42370 136 7e-27
seq72241 122 2e-22
seq73807 104 4e-17
seq65811 87.8 3e-12
>seq42370
Length=41228
Score = 136 bits (150), Expect = 7e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
||||||||||||| || || |||||||| | || | ||| || ||| ||||| ||
Sbjct 10663 ATACCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCA 10604
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || ||||| ||| || || || || |||||||| || |||||||| || || |||
Sbjct 10603 GCTAGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGA 10544
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||| ||||| || || || | || | ||| ||| ||||| ||| |||
Sbjct 10543 GGAATCCCTTCCTTATCCTGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTCA 10484
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| || |||||||| || || || || ||||| || |||||
Sbjct 10483 ACCTCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434
Score = 123 bits (136), Expect = 4e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | | ||||| || ||||| | || | || || || ||||| |||
Sbjct 9979 ATACCACCACGGAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGTATGTTATAATCG 9920
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || |||| || || |||||||| ||||| || || | | ||| ||||| |||
Sbjct 9919 GCTAGGGTTCGGCCGTCCTCCAATTGTTTGCCGGCGAAGATAAGGCGCTGCTGATCCGGA 9860
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || |||||||| || || | || | ||| ||||||||||||| ||||
Sbjct 9859 GGGATACCCTCCTTATCTTGGATCTTAGCCTTGACATTATCAATAGTATCGGAACTCTCA 9800
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || |||||||| || || |||||||| ||||| || || || ||||||
Sbjct 9799 ACCTCGAGAGTTATGGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCATT 9749
Score = 95.1 bits (104), Expect = 2e-14
Identities = 121/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253
|| |||||| ||| || || || ||||||||||| || | | ||| ||||| |||||
Sbjct 10372 AAGGTTCTACCATCCTCCAACTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGA 10313
Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313
|| || || |||||||| || || | || | || ||| ||||| ||| ||| ||
Sbjct 10312 ATCCCCTCCTTATCTTGAATCTTCGCCTTAACGTTATCAATTGTATCAGAACTCTCGACC 10253
Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| | || || || ||||| || || ||||| ||||| ||||||||
Sbjct 10252 TCCAAGGTAATCGTCTTACCAGTCAGAGTTTTAACAAAGATTTGCAT 10206
>seq72241
Length=55963
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| |||| || | |||||||| | || | ||| || ||| ||||| ||
Sbjct 39945 ATACCACCCCTCAGACGCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCA 40004
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || || | | || || || || || |||||||| || | ||| |||||||| |||
Sbjct 40005 GCTAGAGTACGACCGTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGA 40064
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||||||||| || || || | || | ||| || ||||| ||| |||
Sbjct 40065 GGAATCCCTTCTTTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCA 40124
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| ||||||||||| || || || || ||||| || |||||
Sbjct 40125 ACCTCAAGAGTAATAGTTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174
Score = 120 bits (132), Expect = 5e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|| ||||| | || | ||| || |||||| || || | | |||||| || ||
Sbjct 40194 ACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCAAGGGTTCTACCGTCTTCC 40253
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
| || || ||||| ||||||| | ||| ||||||||||| |||||||| ||||||||
Sbjct 40254 AGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGAATTCCTTCCTTATCTTGA 40313
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|| || | || | || ||||||||| ||| || || || ||||| || |||||
Sbjct 40314 ATCTTTGCCTTAACGTTGTCAATAGTATCAGAACTTTCCACCTCAAGAGTGATGGTTTTG 40373
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| ||||| ||||| ||||||||
Sbjct 40374 CCTGTTAGAGTTTTGACAAAAATTTGCAT 40402
>seq73807
Length=69832
Score = 104 bits (114), Expect = 4e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||| |||| || | ||| || ||||||||||| | | || || |
Sbjct 38712 CGAAGAACCAAGTGCAGGGTGGACTCCTTCTGGATATTATAGTCCGCAAGGGTCCTGCCA 38771
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | || || || ||||| || | ||||||||||| ||||| |||||||| ||
Sbjct 38772 TCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGAGGAATTCCTTCCTTG 38831
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || ||||| | ||| | ||| ||||||||| || ||| || || | ||| ||
Sbjct 38832 TCCTGAATTTTTGCTTTCACATTATCAATAGTATCTGAGCTCTCCACCTCCAAAGTGATT 38891
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| || || || || || ||||||||
Sbjct 38892 GTCTTCCCTGTAAGTGTCTTCACGAAAATTTGCAT 38926
>seq65811
Length=66007
Score = 87.8 bits (96), Expect = 3e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| ||||||||||| || || ||||| || || || || || || || || ||||| ||
Sbjct 54862 TGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTGAATC 54921
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| ||| | || ||| || ||||| |||||| || || || || ||||| ||
Sbjct 54922 TTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTTTCCG 54981
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || ||||| ||||||||
Sbjct 54982 GTGAGAGTCTTGACAAAGATTTGCAT 55007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 898762595084640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |