Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq42370 136 7e-27 seq72241 122 2e-22 seq73807 104 4e-17 seq65811 87.8 3e-12 >seq42370 Length=41228 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || |||||||| | || | ||| || ||| ||||| || Sbjct 10663 ATACCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCA 10604 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || ||||| ||| || || || || |||||||| || |||||||| || || ||| Sbjct 10603 GCTAGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGA 10544 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || || | || | ||| ||| ||||| ||| ||| Sbjct 10543 GGAATCCCTTCCTTATCCTGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTCA 10484 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || |||||||| || || || || ||||| || ||||| Sbjct 10483 ACCTCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434 Score = 123 bits (136), Expect = 4e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| || ||||| | || | || || || ||||| ||| Sbjct 9979 ATACCACCACGGAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGTATGTTATAATCG 9920 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| || || |||||||| ||||| || || | | ||| ||||| ||| Sbjct 9919 GCTAGGGTTCGGCCGTCCTCCAATTGTTTGCCGGCGAAGATAAGGCGCTGCTGATCCGGA 9860 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || |||||||| || || | || | ||| ||||||||||||| |||| Sbjct 9859 GGGATACCCTCCTTATCTTGGATCTTAGCCTTGACATTATCAATAGTATCGGAACTCTCA 9800 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || |||||||| || || |||||||| ||||| || || || |||||| Sbjct 9799 ACCTCGAGAGTTATGGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCATT 9749 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || |||||| ||| || || || ||||||||||| || | | ||| ||||| ||||| Sbjct 10372 AAGGTTCTACCATCCTCCAACTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGA 10313 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || || |||||||| || || | || | || ||| ||||| ||| ||| || Sbjct 10312 ATCCCCTCCTTATCTTGAATCTTCGCCTTAACGTTATCAATTGTATCAGAACTCTCGACC 10253 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | || || || ||||| || || ||||| ||||| |||||||| Sbjct 10252 TCCAAGGTAATCGTCTTACCAGTCAGAGTTTTAACAAAGATTTGCAT 10206 >seq72241 Length=55963 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| |||| || | |||||||| | || | ||| || ||| ||||| || Sbjct 39945 ATACCACCCCTCAGACGCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCA 40004 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | | || || || || || |||||||| || | ||| |||||||| ||| Sbjct 40005 GCTAGAGTACGACCGTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGA 40064 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || || || | || | ||| || ||||| ||| ||| Sbjct 40065 GGAATCCCTTCTTTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCA 40124 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||||||||| || || || || ||||| || ||||| Sbjct 40125 ACCTCAAGAGTAATAGTTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174 Score = 120 bits (132), Expect = 5e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || |||||| || || | | |||||| || || Sbjct 40194 ACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCAAGGGTTCTACCGTCTTCC 40253 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || ||||| ||||||| | ||| ||||||||||| |||||||| |||||||| Sbjct 40254 AGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGAATTCCTTCCTTATCTTGA 40313 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || || | || | || ||||||||| ||| || || || ||||| || ||||| Sbjct 40314 ATCTTTGCCTTAACGTTGTCAATAGTATCAGAACTTTCCACCTCAAGAGTGATGGTTTTG 40373 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| ||||| ||||| |||||||| Sbjct 40374 CCTGTTAGAGTTTTGACAAAAATTTGCAT 40402 >seq73807 Length=69832 Score = 104 bits (114), Expect = 4e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| |||| || | ||| || ||||||||||| | | || || | Sbjct 38712 CGAAGAACCAAGTGCAGGGTGGACTCCTTCTGGATATTATAGTCCGCAAGGGTCCTGCCA 38771 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || ||||| || | ||||||||||| ||||| |||||||| || Sbjct 38772 TCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGAGGAATTCCTTCCTTG 38831 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | ||| | ||| ||||||||| || ||| || || | ||| || Sbjct 38832 TCCTGAATTTTTGCTTTCACATTATCAATAGTATCTGAGCTCTCCACCTCCAAAGTGATT 38891 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || |||||||| Sbjct 38892 GTCTTCCCTGTAAGTGTCTTCACGAAAATTTGCAT 38926 >seq65811 Length=66007 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || || ||||| || || || || || || || || ||||| || Sbjct 54862 TGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTGAATC 54921 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | || ||| || ||||| |||||| || || || || ||||| || Sbjct 54922 TTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTTTCCG 54981 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| |||||||| Sbjct 54982 GTGAGAGTCTTGACAAAGATTTGCAT 55007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898762595084640