Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq72241 111 2e-19 seq65811 104 3e-17 seq73807 96.9 5e-15 seq39070 93.3 6e-14 seq71687 84.2 3e-11 >seq72241 Length=55963 Score = 111 bits (122), Expect = 2e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | ||||| ||||||||||| | || || ||| |||| Sbjct 40174 ATGCAGATTTTTGTCAAGACCCTTACTGGTAAAACTATTACTCTTGAGGTTGAAAGTTCT 40115 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || || || || ||||||||||| || ||||| || ||| Sbjct 40114 GATACCATCGATAATGTCAAGGCAAAGATTCAGGATAAAGAAGGGATTCCTCCGGATCAA 40055 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| |||| | |||||| |||||| | ||||| | ||| || | |||||||| Sbjct 40054 CAAAGACTGATCTTTGCCGGGAAGCAGTTGGAAGACGGTCGTACTCTAGCTGATTATAAC 39995 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 || || ||| ||| | || |||||| | ||||| Sbjct 39994 AT-TCAAAAGGAGTCCACTCTTCATCTGGTGTT 39963 >seq65811 Length=66007 Score = 104 bits (114), Expect = 3e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||| ||||| || || || | ||||| || || Sbjct 55235 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACCATCACGCTCGAAGTTGAGAGCTCC 55176 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || |||||| ||||| || |||||||| || ||||| || Sbjct 55175 GACACCATCGACAACGTAAAGGCTAAAATTCAAGACAAGGAAGGCATTCCACCAGACCAG 55116 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||||||||||||||| || | | || || | || || ||| Sbjct 55115 CAAAGATTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTACAAT 55056 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| || | || ||||| || ||| Sbjct 55055 AT-TCAAAAGGAATCCACCCTTCACTTGGTG 55026 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || ||||| || || ||||| || | || || || || Sbjct 54581 AATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACTATCACCCTGGAGGTGGAGAGCTC 54522 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| || ||||| ||||| ||||| || || || || || ||||| || Sbjct 54521 TGACACCATTGACAATGTGAAGGCAAAAATCCAAGACAAGGAGGGAATTCCACCAGACCA 54462 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||| | ||| ||||||||||| |||||| || ||||| | || || || Sbjct 54461 GCAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGAAGGACTTTGGCTGACTACAA 54402 Query 156002 TAT 156004 ||| Sbjct 54401 TAT 54399 >seq73807 Length=69832 Score = 96.9 bits (106), Expect = 5e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | ||||| || || |||| ||||||| ||| ||| Sbjct 39154 ATGCAGATCTTTGTCAAGACTCTTACTGGGAAGACCGTTACCCTAGAAGTAGAAAGCTCT 39095 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || ||| || ||||| ||||||||||| || || || || Sbjct 39094 GATACGATTGATAACGTTAAGGCTAAGATTCAAGACAAAGAAGGCATTCCCCCTGACCAG 39035 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||| | ||||||||| ||||| || ||| || || | | ||||||| Sbjct 39034 CAGCGTCTGATATTTGCCGGTAAACAGCTTGAGGATGGTAGGACACTTGCTGATTATA-- 38977 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 | ||||||| ||| | || || ||||| ||||| Sbjct 38976 ACATCCAAAAGGAGTCAACTCTGCATTTGGTGTT 38943 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || ||| | || || || || || || || || || || || Sbjct 38926 ATGCAAATTTTCGTGAAGACACTTACAGGGAAGACAATCACTTTGGAGGTGGAGAGCTCA 38867 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || |||||| ||||| || || || ||||| || |||||||| ||| Sbjct 38866 GATACTATTGATAATGTGAAAGCAAAAATTCAGGACAAGGAAGGAATTCCTCCAGATCAA 38807 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || ||||||||||| ||| ||| || | | || |||||| Sbjct 38806 CAGAGGCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACCCTTGCGGACTATAAT 38747 Query 156003 AT 156004 || Sbjct 38746 AT 38745 >seq39070 Length=11651 Score = 93.3 bits (102), Expect = 6e-14 Identities = 355/556 (64%), Gaps = 13/556 (2%) Strand=Plus/Minus Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 ||| || ||||| ||| || | |||||||||| || ||||| ||||| || || Sbjct 7938 TAAGCAGGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGT 7879 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 ||| |||||||| | || | ||| |||||||||||||||| ||||| | || || Sbjct 7878 TAATCCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAA 7819 Query 18274 GAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333 ||||| |||||||| || || || || | | | |||||||| | ||| || Sbjct 7818 AAATATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAA---GGATTCCGAGCC 7762 Query 18334 CAGTATCCATTTTTGTGCCC-ATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392 ||||| |||||| ||| |||| | ||| || || |||| || | Sbjct 7761 ATCGATCCAACGAAGTGCCCAATTGGCCTT-CTTTTCAACACAAGGAATGGTCTCAATCG 7703 Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 || ||| | || || || | ||||| ||||| || | |||| || | | || Sbjct 7702 CACGAAAGAGCCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCAATAGACTAT 7643 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 |||| || || || || | || ||||| || ||||| | ||||| | | ||||| | Sbjct 7642 ACATCTCGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTG 7583 Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 | ||||| || | |||| | | | |||||| ||| ||||| |||| || Sbjct 7582 AAATTTGAACTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAG 7523 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTG---- 18628 || ||||| || | ||| | | ||||| || || | | ||| | | Sbjct 7522 CGGCAAAAAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGT----CGGGAGTTAGGGCT 7467 Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688 | ||||| | || | || ||||| ||||| || | |||||| ||||| | ||| Sbjct 7466 TCCCATTGGCGGAGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCG 7407 Query 18689 GCCTGTTTGTACATTT 18704 |||| |||||||||| Sbjct 7406 GCCTTCTTGTACATTT 7391 >seq71687 Length=64904 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | ||||| |||| || || || ||||| | || || ||| Sbjct 44915 AAGATGCAGATCTTCGTGAAAACCCTGACGGGTAAGACCATTACCCTCGAGGTTGAATCC 44856 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| || ||||| || || |||||||| |||||||| || || || Sbjct 44855 TCCGATACCATTGACAATGTGAAGGCGAAGATCCAAGATAAGGAAGGCATCCCACCGGAT 44796 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || || | || | |||||| ||||||||||| || ||| || ||| | ||||| Sbjct 44795 CAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGAAGGCAGGACCTTAGCGGATTAC 44736 Query 156000 AATATATCCAAAGAGGCGACGCTTCA 156025 || || || ||| |||| || || Sbjct 44735 AACATCCAGAAGGAGTCGACACTGCA 44710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731146513583200