Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq42370 140 6e-28
seq72241 134 3e-26
seq73807 131 3e-25
seq65811 96.9 7e-15
seq73986 95.1 2e-14
>seq42370
Length=41228
Score = 140 bits (154), Expect = 6e-28
Identities = 171/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
||||||||||| ||||| | || | ||| | || | ||| ||| || || ||||||||
Sbjct 10663 ATACCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGA-ATGTTATAATC 10605
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
|| || |||| |||| ||||| || || || |||||||| |||||||| || || ||
Sbjct 10604 AGCTAGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGG 10545
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || ||||| ||||| || || || || |||||| || | ||| || |||
Sbjct 10544 AGGAATCCCTTCCTTATCCTGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTC 10485
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || |||||||||||||||||||| | || |||| ||| ||||||||
Sbjct 10484 AACCTCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434
Score = 107 bits (118), Expect = 4e-18
Identities = 133/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
||||| ||||||| || || ||| |||| || | || || ||||| ||||| | |||
Sbjct 10843 ATATTGTAATCAGCCAAAGTACGTCCATCCTCGAGCTGCTTCCCAGCGAAGATGAGCCTC 10784
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| ||||| || || || || || ||||| || || || || |||||| ||| | |
Sbjct 10783 TGCTGATCCGGGGGAATCCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCTATGGTA 10724
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
||||| || || || |||||||| ||||| || || ||||| || | ||||||||||
Sbjct 10723 TCTGAGCTCTCAACCTCCAGAGTAATAGTTTTCCCTGTCAATGTCTTGACAAATATCTGC 10664
Query 192535 AT 192536
||
Sbjct 10663 AT 10662
Score = 104 bits (114), Expect = 5e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||| | || || | ||| | || | |||||| ||||| |||||
Sbjct 10207 ATCCCACCGCGAAGCCTCAAGACGAGATGAAGGGTCGACTCTTTTTGAATATTGTAATCG 10148
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || || |||| |||||||| || ||||||||||| | || || || || ||
Sbjct 10147 GCAAGAGTCCGGCCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGA 10088
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| ||||| || |||||| || || || |||| || || ||
Sbjct 10087 GGGATCCCTTCCTTATCCTGAATTTTAGCCTTGACGTTGTCAATAGTGTCGGAACTCTCA 10028
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || |||||||| || || || |||| ||||||| ||||||||||||
Sbjct 10027 ACCTCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTAACAAATATCTGCAT 9978
Score = 102 bits (112), Expect = 2e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||||| | || | ||| | || | || || || ||||||||
Sbjct 9979 ATACCACCACGGAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGTATGTTATAATCG 9920
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || ||||| | || ||||||||||| || || ||||| | | ||| ||||| ||
Sbjct 9919 GCTAGGGTTCGGCCGTCCTCCAATTGTTTGCCGGCGAAGATAAGGCGCTGCTGATCCGGA 9860
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || |||||||| || ||| || |||||| |||| ||| || ||
Sbjct 9859 GGGATACCCTCCTTATCTTGGATCTTAGCCTTGACATTATCAATAGTATCGGAACTCTCA 9800
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || ||||| ||||| || || |||| ||||| | || |||||||||
Sbjct 9799 ACCTCGAGAGTTATGGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCATT 9749
>seq72241
Length=55963
Score = 134 bits (148), Expect = 3e-26
Identities = 170/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
|||||||| || ||||| || || | ||| | ||| | ||| ||| || || ||||||||
Sbjct 39945 ATACCACCCCTCAGACGCAACACCAGATGAAGAGTGGACTCCTTTTGA-ATGTTATAATC 40003
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
|| || || || | || ||||| || || || |||||||| | ||| |||||||| ||
Sbjct 40004 AGCTAGAGTACGACCGTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGG 40063
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || ||||||||||| || || || || |||||| || | ||| || |||
Sbjct 40064 AGGAATCCCTTCTTTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTC 40123
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || |||||||| ||||||||||| | || || | ||| ||||||||
Sbjct 40124 AACCTCAAGAGTAATAGTTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174
Score = 100 bits (110), Expect = 6e-16
Identities = 132/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
|||||| ||||||| | || || |||| || | || || ||||| || || | ||
Sbjct 39764 GATATTGTAATCAGCCAGAGTACGCCCATCTTCAAGCTGCTTTCCAGCGAATATAAGCCT 39823
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| ||||| || || ||||| ||||| || || || || | || |||||| ||| |
Sbjct 39824 CTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGAATCTTGGTCTTCACATTATCTATGGT 39883
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
|||||| || || |||| ||||| || || ||||| ||||| || | |||||||||
Sbjct 39884 ATCTGAACTCTCAACCTCTAACGTAATCGTCTTCCCAGTCAATGTCTTCACAAATATCTG 39943
Query 192534 CAT 192536
|||
Sbjct 39944 CAT 39946
Score = 96.9 bits (106), Expect = 7e-15
Identities = 161/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | || | | || | ||| | ||||| ||| || ||||||||||||
Sbjct 40629 ATACCACCGCGGAGTCTGAGGACAAGATGGAGAGTAGACTCCTTCTGGATATTATAATCG 40688
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | ||||| | || || | |||||| || || ||||||| | ||| ||||| ||
Sbjct 40689 GCGAGGGTTCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGA 40748
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||| || || ||||| || ||| || ||||| || | ||| || ||
Sbjct 40749 GGGATTCCCTCCTTGTCTTGAATCTTAGCCTTGACATTGTCGATTGTATCGGAGCTCTCG 40808
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || || ||||| || ||||| |||| ||||| | || |||||||| ||
Sbjct 40809 ACCTCAAGGGTAATTGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCATCTT 40861
>seq73807
Length=69832
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||| | || || | ||| | || | ||| || || ||||||||
Sbjct 39837 ATGCCACCCCGAAGCCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTATAATCT 39896
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || || |||| |||| |||||| ||||||||||| |||||||| ||||||||
Sbjct 39897 GCAAGGGTACGACCATCCTCCAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGG 39956
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| |||||||| || ||||| ||||| ||| |||||| |||| || || |||
Sbjct 39957 GGAATTCCTTCCTTGTCTTGAATTTTTGCTTTGACATTATCAATAGTGTCAGAACTCTCT 40016
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| ||||| || || || ||||| | || |||| ||| ||||||||
Sbjct 40017 ACTTCGAGAGTTATTGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 40066
Score = 113 bits (124), Expect = 9e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| || || || | ||| || || ||||| | ||| | ||| || ||| |||||||||
Sbjct 38925 ATGCCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCA 38984
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | ||| | |||| || | |||||||| ||||| || | | ||| || |||||
Sbjct 38985 GCAAGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGG 39044
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||| ||||| || ||| || || ||| || | ||| || ||||
Sbjct 39045 GGAATGCCTTCTTTGTCTTGAATCTTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCT 39104
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|||||||| |||| ||| || ||||| | || || | ||| ||||||||
Sbjct 39105 ACTTCTAGGGTAACGGTCTTCCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154
Score = 86.0 bits (94), Expect = 1e-11
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
|| || | |||||| | || || || | || | ||| || ||||||||| || |
Sbjct 38700 CCTCCACGAAGACGAAGAACCAAGTGCAGGGTGGACTCCTTCTGGATATTATAGTCCGCA 38759
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
| || | |||| || | || || ||||||||||| | ||||||||||| || ||
Sbjct 38760 AGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGAGGA 38819
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
|||||||| || || || ||||| ||| |||||| |||| |||||| || ||
Sbjct 38820 ATTCCTTCCTTGTCCTGAATTTTTGCTTTCACATTATCAATAGTATCTGAGCTCTCCACC 38879
Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| | ||| || || || || || | ||| || | || || |||||
Sbjct 38880 TCCAAAGTGATTGTCTTCCCTGTAAGTGTCTTCACGAAAATTTGCAT 38926
>seq65811
Length=66007
Score = 96.9 bits (106), Expect = 7e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
||||| | ||||| | || | ||| | || | ||| || |||||| || ||||
Sbjct 54354 CCACCACGGAGACGGAGGACAAGATGGAGTGTTGACTCCTTCTGGATATTGTAGTCAGCC 54413
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
|| || | | |||| |||| || |||||||||||||| || ||||| || || |||||
Sbjct 54414 AAAGTCCTTCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGGA 54473
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
||||| || || ||||| ||||| || ||||| || | || || || ||
Sbjct 54474 ATTCCCTCCTTGTCTTGGATTTTTGCCTTCACATTGTCAATGGTGTCAGAGCTCTCCACC 54533
Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || || || || ||||| || || || || | ||| |||||||||
Sbjct 54534 TCCAGGGTGATAGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 54581
>seq73986
Length=64159
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
|| |||||||| | || || || || | || | ||||| ||||||||| ||||
Sbjct 17038 CCTCCTCTAAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTCTGGATATTATAGTCAGCC 17097
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
|| || || |||| |||||||| ||||||||||| || | |||||| ||||| || ||
Sbjct 17098 AAAGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGCTGATCGGGAGGA 17157
Query 192430 ATTCCTTCTTTATCTTG 192446
|| ||||||||||| ||
Sbjct 17158 ATACCTTCTTTATCCTG 17174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 983479712327700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |