Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq42370 140 6e-28 seq72241 134 3e-26 seq73807 131 3e-25 seq65811 96.9 7e-15 seq73986 95.1 2e-14 >seq42370 Length=41228 Score = 140 bits (154), Expect = 6e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||||||||| ||||| | || | ||| | || | ||| ||| || || |||||||| Sbjct 10663 ATACCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGA-ATGTTATAATC 10605 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || |||| |||| ||||| || || || |||||||| |||||||| || || || Sbjct 10604 AGCTAGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGG 10545 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| ||||| || || || || |||||| || | ||| || ||| Sbjct 10544 AGGAATCCCTTCCTTATCCTGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTC 10485 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||||||||||||||| | || |||| ||| |||||||| Sbjct 10484 AACCTCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||||| || || ||| |||| || | || || ||||| ||||| | ||| Sbjct 10843 ATATTGTAATCAGCCAAAGTACGTCCATCCTCGAGCTGCTTCCCAGCGAAGATGAGCCTC 10784 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || || || || || ||||| || || || || |||||| ||| | | Sbjct 10783 TGCTGATCCGGGGGAATCCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCTATGGTA 10724 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| || || || |||||||| ||||| || || ||||| || | |||||||||| Sbjct 10723 TCTGAGCTCTCAACCTCCAGAGTAATAGTTTTCCCTGTCAATGTCTTGACAAATATCTGC 10664 Query 192535 AT 192536 || Sbjct 10663 AT 10662 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| | || || | ||| | || | |||||| ||||| ||||| Sbjct 10207 ATCCCACCGCGAAGCCTCAAGACGAGATGAAGGGTCGACTCTTTTTGAATATTGTAATCG 10148 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||||||| || ||||||||||| | || || || || || Sbjct 10147 GCAAGAGTCCGGCCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGA 10088 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || |||||| || || || |||| || || || Sbjct 10087 GGGATCCCTTCCTTATCCTGAATTTTAGCCTTGACGTTGTCAATAGTGTCGGAACTCTCA 10028 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| || || || |||| ||||||| |||||||||||| Sbjct 10027 ACCTCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTAACAAATATCTGCAT 9978 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | ||| | || | || || || |||||||| Sbjct 9979 ATACCACCACGGAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGTATGTTATAATCG 9920 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||||| | || ||||||||||| || || ||||| | | ||| ||||| || Sbjct 9919 GCTAGGGTTCGGCCGTCCTCCAATTGTTTGCCGGCGAAGATAAGGCGCTGCTGATCCGGA 9860 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || ||| || |||||| |||| ||| || || Sbjct 9859 GGGATACCCTCCTTATCTTGGATCTTAGCCTTGACATTATCAATAGTATCGGAACTCTCA 9800 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| ||||| || || |||| ||||| | || ||||||||| Sbjct 9799 ACCTCGAGAGTTATGGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCATT 9749 >seq72241 Length=55963 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| || ||||| || || | ||| | ||| | ||| ||| || || |||||||| Sbjct 39945 ATACCACCCCTCAGACGCAACACCAGATGAAGAGTGGACTCCTTTTGA-ATGTTATAATC 40003 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || || || | || ||||| || || || |||||||| | ||| |||||||| || Sbjct 40004 AGCTAGAGTACGACCGTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGG 40063 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||||||||| || || || || |||||| || | ||| || ||| Sbjct 40064 AGGAATCCCTTCTTTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTC 40123 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| ||||||||||| | || || | ||| |||||||| Sbjct 40124 AACCTCAAGAGTAATAGTTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174 Score = 100 bits (110), Expect = 6e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||||| | || || |||| || | || || ||||| || || | || Sbjct 39764 GATATTGTAATCAGCCAGAGTACGCCCATCTTCAAGCTGCTTTCCAGCGAATATAAGCCT 39823 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| || || ||||| ||||| || || || || | || |||||| ||| | Sbjct 39824 CTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGAATCTTGGTCTTCACATTATCTATGGT 39883 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 |||||| || || |||| ||||| || || ||||| ||||| || | ||||||||| Sbjct 39884 ATCTGAACTCTCAACCTCTAACGTAATCGTCTTCCCAGTCAATGTCTTCACAAATATCTG 39943 Query 192534 CAT 192536 ||| Sbjct 39944 CAT 39946 Score = 96.9 bits (106), Expect = 7e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || | | || | ||| | ||||| ||| || |||||||||||| Sbjct 40629 ATACCACCGCGGAGTCTGAGGACAAGATGGAGAGTAGACTCCTTCTGGATATTATAATCG 40688 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| | || || | |||||| || || ||||||| | ||| ||||| || Sbjct 40689 GCGAGGGTTCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGA 40748 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| || ||| || ||||| || | ||| || || Sbjct 40749 GGGATTCCCTCCTTGTCTTGAATCTTAGCCTTGACATTGTCGATTGTATCGGAGCTCTCG 40808 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||| || ||||| |||| ||||| | || |||||||| || Sbjct 40809 ACCTCAAGGGTAATTGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCATCTT 40861 >seq73807 Length=69832 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| | || || | ||| | || | ||| || || |||||||| Sbjct 39837 ATGCCACCCCGAAGCCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTATAATCT 39896 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| |||||| ||||||||||| |||||||| |||||||| Sbjct 39897 GCAAGGGTACGACCATCCTCCAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGG 39956 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| ||||| ||| |||||| |||| || || ||| Sbjct 39957 GGAATTCCTTCCTTGTCTTGAATTTTTGCTTTGACATTATCAATAGTGTCAGAACTCTCT 40016 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || || || ||||| | || |||| ||| |||||||| Sbjct 40017 ACTTCGAGAGTTATTGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 40066 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || | ||| || || ||||| | ||| | ||| || ||| ||||||||| Sbjct 38925 ATGCCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCA 38984 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| | |||| || | |||||||| ||||| || | | ||| || ||||| Sbjct 38985 GCAAGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGG 39044 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || ||| || || ||| || | ||| || |||| Sbjct 39045 GGAATGCCTTCTTTGTCTTGAATCTTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCT 39104 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| |||| ||| || ||||| | || || | ||| |||||||| Sbjct 39105 ACTTCTAGGGTAACGGTCTTCCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || || || | || | ||| || ||||||||| || | Sbjct 38700 CCTCCACGAAGACGAAGAACCAAGTGCAGGGTGGACTCCTTCTGGATATTATAGTCCGCA 38759 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || | |||| || | || || ||||||||||| | ||||||||||| || || Sbjct 38760 AGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGAGGA 38819 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| || || || ||||| ||| |||||| |||| |||||| || || Sbjct 38820 ATTCCTTCCTTGTCCTGAATTTTTGCTTTCACATTATCAATAGTATCTGAGCTCTCCACC 38879 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||| || || || || || | ||| || | || || ||||| Sbjct 38880 TCCAAAGTGATTGTCTTCCCTGTAAGTGTCTTCACGAAAATTTGCAT 38926 >seq65811 Length=66007 Score = 96.9 bits (106), Expect = 7e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||||| | || | ||| | || | ||| || |||||| || |||| Sbjct 54354 CCACCACGGAGACGGAGGACAAGATGGAGTGTTGACTCCTTCTGGATATTGTAGTCAGCC 54413 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || | | |||| |||| || |||||||||||||| || ||||| || || ||||| Sbjct 54414 AAAGTCCTTCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGGA 54473 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||| || || ||||| ||||| || ||||| || | || || || || Sbjct 54474 ATTCCCTCCTTGTCTTGGATTTTTGCCTTCACATTGTCAATGGTGTCAGAGCTCTCCACC 54533 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || || ||||| || || || || | ||| ||||||||| Sbjct 54534 TCCAGGGTGATAGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 54581 >seq73986 Length=64159 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || |||||||| | || || || || | || | ||||| ||||||||| |||| Sbjct 17038 CCTCCTCTAAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTCTGGATATTATAGTCAGCC 17097 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || |||| |||||||| ||||||||||| || | |||||| ||||| || || Sbjct 17098 AAAGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGCTGATCGGGAGGA 17157 Query 192430 ATTCCTTCTTTATCTTG 192446 || ||||||||||| || Sbjct 17158 ATACCTTCTTTATCCTG 17174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983479712327700