Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq42370 127 4e-24
seq72241 122 2e-22
seq73807 93.3 8e-14
>seq42370
Length=41228
Score = 127 bits (140), Expect = 4e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| || || | || | ||| | || | ||| || ||| ||||||||
Sbjct 10663 ATACCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCA 10604
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || || || | || ||||| || || || ||||| || |||||||| ||||| ||
Sbjct 10603 GCTAGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGA 10544
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| ||||| || || || || |||||| || ||||| || |||
Sbjct 10543 GGAATCCCTTCCTTATCCTGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTCA 10484
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || |||||||||||||||||||| | || |||| || ||||||||
Sbjct 10483 ACCTCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | ||| | || || | ||| | || | |||||| |||||| |||||
Sbjct 10207 ATCCCACCGCGAAGCCTCAAGACGAGATGAAGGGTCGACTCTTTTTGAATATTGTAATCG 10148
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | || || | || |||||||| || |||||||| || | || || ||||| ||
Sbjct 10147 GCAAGAGTCCGGCCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGA 10088
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| ||||| || |||||| || || || ||||| || || ||
Sbjct 10087 GGGATCCCTTCCTTATCCTGAATTTTAGCCTTGACGTTGTCAATAGTGTCGGAACTCTCA 10028
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || |||||||| || || || |||| ||||||| |||||||||||
Sbjct 10027 ACCTCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTAACAAATATCTGCAT 9978
Score = 100 bits (110), Expect = 5e-16
Identities = 132/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
|| |||||||| | || | ||| |||| ||||||||||| || || || || | | |
Sbjct 9931 ATGTTATAATCGGCTAGGGTTCGGCCGTCCTCCAATTGTTTGCCGGCGAAGATAAGGCGC 9872
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
|| || || || || || || || |||||||| || ||| || |||||| ||||||
Sbjct 9871 TGCTGATCCGGAGGGATACCCTCCTTATCTTGGATCTTAGCCTTGACATTATCAATAGTA 9812
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| || || || || ||||| ||||| || || |||| ||||| | ||| ||||||
Sbjct 9811 TCGGAACTCTCAACCTCGAGAGTTATGGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGC 9752
Query 172068 ATT 172070
|||
Sbjct 9751 ATT 9749
Score = 91.5 bits (100), Expect = 3e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
|||||| ||||| | |||| ||| | || || | || || ||||| || || | ||
Sbjct 10844 AATATTGTAATCAGCCAAAGTACGTCCATCCTCGAGCTGCTTCCCAGCGAAGATGAGCCT 10785
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
||| || || || || || || || ||||| || || || || |||||| ||| ||
Sbjct 10784 CTGCTGATCCGGGGGAATCCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCTATGGT 10725
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
|||||| || || || |||||||| ||||| || || ||||| || | ||||||||
Sbjct 10724 ATCTGAGCTCTCAACCTCCAGAGTAATAGTTTTCCCTGTCAATGTCTTGACAAATATCTG 10665
Query 172067 CAT 172069
|||
Sbjct 10664 CAT 10662
>seq72241
Length=55963
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| || || || || || | ||| | ||| | ||| || ||| ||||||||
Sbjct 39945 ATACCACCCCTCAGACGCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCA 40004
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || || || |||| ||||| || || || ||||| || | ||| ||||| || ||
Sbjct 40005 GCTAGAGTACGACCGTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGA 40064
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||||||||| || || || || |||||| || ||||| || |||
Sbjct 40065 GGAATCCCTTCTTTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCA 40124
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || |||||||| ||||||||||| | || || | || ||||||||
Sbjct 40125 ACCTCAAGAGTAATAGTTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174
Score = 96.9 bits (106), Expect = 6e-15
Identities = 161/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | |||| | || | ||| | ||||| ||| || |||||||||||
Sbjct 40629 ATACCACCGCGGAGTCTGAGGACAAGATGGAGAGTAGACTCCTTCTGGATATTATAATCG 40688
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | | ||| |||| || | |||||| || || || |||| | ||| || || ||
Sbjct 40689 GCGAGGGTTCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGA 40748
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||| || || ||||| || ||| || ||||| || ||||| || ||
Sbjct 40749 GGGATTCCCTCCTTGTCTTGAATCTTAGCCTTGACATTGTCGATTGTATCGGAGCTCTCG 40808
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| || || ||||| || ||||| |||| ||||| | ||| |||||||| ||
Sbjct 40809 ACCTCAAGGGTAATTGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCATCTT 40861
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
||||| ||||| | | || || | || || | || || ||||| || || | |||
Sbjct 39765 ATATTGTAATCAGCCAGAGTACGCCCATCTTCAAGCTGCTTTCCAGCGAATATAAGCCTC 39824
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
|| || || || || ||||| ||||| || || || || | || |||||| ||| |||
Sbjct 39825 TGCTGATCCGGGGGAATTCCCTCTTTGTCCTGAATCTTGGTCTTCACATTATCTATGGTA 39884
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
||||| || || |||| ||||| || || ||||| ||||| || | |||||||||
Sbjct 39885 TCTGAACTCTCAACCTCTAACGTAATCGTCTTCCCAGTCAATGTCTTCACAAATATCTGC 39944
Query 172068 AT 172069
||
Sbjct 39945 AT 39946
>seq73807
Length=69832
Score = 93.3 bits (102), Expect = 8e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983
|||||||| ||||| || | | ||| |||||||| || || |||||||| ||||| ||
Sbjct 39009 TGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGAATC 39068
Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043
||| || || ||| || ||||| || |||||||||||| |||| ||| || |||
Sbjct 39069 TTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCTACTTCTAGGGTAACGGTCTTCCCA 39128
Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069
|| | || || | || ||||||||
Sbjct 39129 GTAAGAGTCTTGACAAAGATCTGCAT 39154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904238761311600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |