Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq42370 127 4e-24 seq72241 122 2e-22 seq73807 93.3 8e-14 >seq42370 Length=41228 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || | ||| | || | ||| || ||| |||||||| Sbjct 10663 ATACCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCA 10604 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || || | || ||||| || || || ||||| || |||||||| ||||| || Sbjct 10603 GCTAGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGA 10544 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || || || |||||| || ||||| || ||| Sbjct 10543 GGAATCCCTTCCTTATCCTGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTCA 10484 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||||||||||||||| | || |||| || |||||||| Sbjct 10483 ACCTCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| | || || | ||| | || | |||||| |||||| ||||| Sbjct 10207 ATCCCACCGCGAAGCCTCAAGACGAGATGAAGGGTCGACTCTTTTTGAATATTGTAATCG 10148 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || |||||||| || |||||||| || | || || ||||| || Sbjct 10147 GCAAGAGTCCGGCCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGA 10088 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || |||||| || || || ||||| || || || Sbjct 10087 GGGATCCCTTCCTTATCCTGAATTTTAGCCTTGACGTTGTCAATAGTGTCGGAACTCTCA 10028 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| || || || |||| ||||||| ||||||||||| Sbjct 10027 ACCTCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTAACAAATATCTGCAT 9978 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||| | || | ||| |||| ||||||||||| || || || || | | | Sbjct 9931 ATGTTATAATCGGCTAGGGTTCGGCCGTCCTCCAATTGTTTGCCGGCGAAGATAAGGCGC 9872 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || || || || || || |||||||| || ||| || |||||| |||||| Sbjct 9871 TGCTGATCCGGAGGGATACCCTCCTTATCTTGGATCTTAGCCTTGACATTATCAATAGTA 9812 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || ||||| ||||| || || |||| ||||| | ||| |||||| Sbjct 9811 TCGGAACTCTCAACCTCGAGAGTTATGGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGC 9752 Query 172068 ATT 172070 ||| Sbjct 9751 ATT 9749 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| | |||| ||| | || || | || || ||||| || || | || Sbjct 10844 AATATTGTAATCAGCCAAAGTACGTCCATCCTCGAGCTGCTTCCCAGCGAAGATGAGCCT 10785 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || || || || || || ||||| || || || || |||||| ||| || Sbjct 10784 CTGCTGATCCGGGGGAATCCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCTATGGT 10725 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 |||||| || || || |||||||| ||||| || || ||||| || | |||||||| Sbjct 10724 ATCTGAGCTCTCAACCTCCAGAGTAATAGTTTTCCCTGTCAATGTCTTGACAAATATCTG 10665 Query 172067 CAT 172069 ||| Sbjct 10664 CAT 10662 >seq72241 Length=55963 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || || || || || | ||| | ||| | ||| || ||| |||||||| Sbjct 39945 ATACCACCCCTCAGACGCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCA 40004 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || || |||| ||||| || || || ||||| || | ||| ||||| || || Sbjct 40005 GCTAGAGTACGACCGTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGA 40064 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||| || || || || |||||| || ||||| || ||| Sbjct 40065 GGAATCCCTTCTTTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCA 40124 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| ||||||||||| | || || | || |||||||| Sbjct 40125 ACCTCAAGAGTAATAGTTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174 Score = 96.9 bits (106), Expect = 6e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||| | || | ||| | ||||| ||| || ||||||||||| Sbjct 40629 ATACCACCGCGGAGTCTGAGGACAAGATGGAGAGTAGACTCCTTCTGGATATTATAATCG 40688 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| |||| || | |||||| || || || |||| | ||| || || || Sbjct 40689 GCGAGGGTTCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGA 40748 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || ||||| || ||| || ||||| || ||||| || || Sbjct 40749 GGGATTCCCTCCTTGTCTTGAATCTTAGCCTTGACATTGTCGATTGTATCGGAGCTCTCG 40808 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || ||||| || ||||| |||| ||||| | ||| |||||||| || Sbjct 40809 ACCTCAAGGGTAATTGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCATCTT 40861 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| | | || || | || || | || || ||||| || || | ||| Sbjct 39765 ATATTGTAATCAGCCAGAGTACGCCCATCTTCAAGCTGCTTTCCAGCGAATATAAGCCTC 39824 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || || || ||||| ||||| || || || || | || |||||| ||| ||| Sbjct 39825 TGCTGATCCGGGGGAATTCCCTCTTTGTCCTGAATCTTGGTCTTCACATTATCTATGGTA 39884 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| || || |||| ||||| || || ||||| ||||| || | ||||||||| Sbjct 39885 TCTGAACTCTCAACCTCTAACGTAATCGTCTTCCCAGTCAATGTCTTCACAAATATCTGC 39944 Query 172068 AT 172069 || Sbjct 39945 AT 39946 >seq73807 Length=69832 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 |||||||| ||||| || | | ||| |||||||| || || |||||||| ||||| || Sbjct 39009 TGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGAATC 39068 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || || ||| || ||||| || |||||||||||| |||| ||| || ||| Sbjct 39069 TTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCTACTTCTAGGGTAACGGTCTTCCCA 39128 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || || | || |||||||| Sbjct 39129 GTAAGAGTCTTGACAAAGATCTGCAT 39154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904238761311600