Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq35021 156 5e-32 seq39070 152 6e-31 >seq35021 Length=73443 Score = 156 bits (172), Expect = 5e-32 Identities = 201/274 (73%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| || |||||||||||||| ||||| ||||||||||| | | || | | || Sbjct 66351 GAGTGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAAATCTGA 66410 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||| || ||||| || ||||| || ||||| || |||||||| Sbjct 66411 ACTTCTTTCATGAATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAGCGGCGAAG 66470 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| |||| ||||| ||||||||| |||| | |||| | |||| Sbjct 66471 AAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCCA-TTGACG 66529 Query 869813 GTG--TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | | | | | | || || ||||||||||||||||||| || ||||| ||||| |||| Sbjct 66530 GAGGTCCTGAGAT-AGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCTTCTTGT 66588 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 |||||||||| | || |||| | || ||||| Sbjct 66589 ACATCTCCCAAATCTGAGGGTATTGAATTGGGAA 66622 Score = 100 bits (110), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| || ||| | ||||| |||| || |||||||| ||||| || || Sbjct 66071 ACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGTCCGGGCATAAGGCCACGTTT 66130 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| | |||||| || ||||| ||||| ||||||||||| || || ||||| || || Sbjct 66131 CTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAAAATATTCCTTCGACACAAGCGAA 66190 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | ||| | || |||||||||| || ||| || |||||| | ||||| Sbjct 66191 GGCGACTATACGTTCGGCAAAGGATTCCGAGCC------GTCGATCCAACGAAGTGCCCA 66244 Query 869359 GTCGGCCTTTTTCCTCACCG-ACGGCACCGTGTCGATGGCGCGAAAGAG 869406 | |||||| || ||| || | || | || ||||| ||||||||||| Sbjct 66245 TTTGGCCTTCTT-TTCAACGCAAGGAATTGTTTCGATTGCGCGAAAGAG 66292 >seq39070 Length=11651 Score = 152 bits (168), Expect = 6e-31 Identities = 197/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| || |||||||| || || || |||||||||||||| | |||||| | ||| Sbjct 7634 GAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGAAATTTGA 7575 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||| |||||||| || ||||| || || || || ||||| ||| Sbjct 7574 ACTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAGCGGCAAAA 7515 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| |||| ||||| ||||||||| | || | |||| ||| | Sbjct 7514 AAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTTCCCATTGGCGG 7455 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| ||| || || |||||||| ||||||| |||||||||||||| |||||| Sbjct 7454 AGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTAC 7395 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 || ||||| | || |||| | || ||||| Sbjct 7394 ATTTCCCAAATCTGAGGGTATTGAATTGGGAA 7363 Score = 87.8 bits (96), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 10/231 (4%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 |||||||| || || || ||||| |||||||| || || || ||||| ||||||||||| Sbjct 7874 CCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 7815 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| || |||||| ||| || ||||| ||||||| || ||| || Sbjct 7814 ATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATC---- 7759 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCT--TTTTCCTCACCGACGGCACCGTGTCGATGG 869396 |||||| | ||||| | ||||| ||||| ||| | || | || || || | Sbjct 7758 --GATCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACAC--AAGGAATGGTCTCAATCG 7703 Query 869397 CGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCA 869447 | |||||||| | ||| ||| | | ||||| | |||| |||| || Sbjct 7702 CACGAAAGAGCCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCA 7652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6100631306508734